nf-core
Repositories list
200 repositories
demultiplex
Publicgenomeqc
PublicCompare the quality of multiple genomes, along with their annotations.bamtofastq
PublicConverts bam or cram files to fastq format and does quality control.rnasplice
Publicmetatdenovo
PublicAssembly and annotation of metatranscriptomic or metagenomic data for prokaryotic, eukaryotic and viruses.pixelator
PublicPipeline to generate Proximity Network Assay data with Pixelator (Pixelgen Technologies AB)website
Publicfuncprofiler
Publicstableexpression
PublicThis pipeline is dedicated to identifying the most stable genes within a single or multiple expression dataset(s). This is particularly useful for identifying t…phyloplace
Publicnf-core/phyloplace is a bioinformatics best-practice analysis pipeline that performs phylogenetic placement with EPA-NG.modules
Public- Call and score variants from WGS/WES of rare disease patients.
oncoanalyser
Public- Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
proteinannotator
PublicGeneration of sequence-level annotations for amino acid sequencesproteinfamilies
PublicGeneration and updating of protein familiesmagmap
Publicpairgenomealign
PublicPairwise genome comparison pipeline using the LAST software to align a list of query genomes to a target genome, and plot the resultsabotyper
Publicstrict-syntax-health
Publictest-datasets
Publicmag
PublicAssembly and binning of metagenomeshadge
PublicComprehensive pipeline for donor demultiplexing in single cell
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