phylogenetic-networks

Hybridization detection using phylogenetic invariants

𝙋𝙝𝙮𝙡𝙤𝙜𝙚𝙣𝙚𝙩𝙞𝙘 𝘾𝙤𝙢𝙥𝙤𝙣𝙚𝙣𝙩 𝙂𝙧𝙖𝙥𝙝 ⸺ Haskell program and libraries for general phylogenetic graph search

Bash scripts for analysis of Hyb-Seq data (from raw reads to species trees/networks)

phylogenetic networks using ggplot2 and ggtree

Alignment-free phylogenomic splits

PhyloZoo: a Python package for working with phylogenetic networks and related evolutionary datatypes

Discordant attachment frequency tool

Framework for construction of phylogenetic networks on High Performance Computing (HPC) environment

Code for the study: Integrating lineage-specific and universal genomic probes illuminates phylogenetic relationships and molecular evolution in Sauvagesieae (Ochnaceae)

Squirrel: a Python package for reconstructing level-1 phylogenetic networks from sequence alignments or four-leaved networks

PaNDA: a Python package for computing and maximizing phylogenetic diversity in phylogenetic networks