A module with convenience functions for writing Python code that interacts with OMERO.

A dataset for loading zarr files to be used in machine learning training pipelines

Medulla RMM is a radically simple IT automation and lifecycle management tool that offers the ability to handle repetitive tasks, quickly deploy applications, operating system and proactively manage them all where ever they are.

A relabeling tool for tiled segmentation with Dask

material for the "OMERO for developers" workshop.

A module and scripts for working with OMERO

Tutorials for using scikit-image, written for The Jackson Laboratory

Making it easier for users to spin up a Singularity container with image analysis tools from a slurm-based cluster

A deep learning model for histological image compression and decompression

Convolutional Autoencoder (CAE) codec for image compression and storing in NGFF (Zarr) format.

Tools to visualize HCS data stored in zarr files

Container for preprocessing slides using HistoQC

Saving napari ROIs into OMERO

U-Net model for glomeruli segmentation in Whole Slide Images

code and data for 'Intermediate Image Analysis - Images as Signals' workshop

ROMI library controlling the PlantImager (hardware) or the VirtualPlantImager (Blender) to acquire images of (virtual) single potted plants.

Repo for generating OMERO reports/dashboards

NOTICE OF CONSOLIDATION & PARTNERSHIP PENDING As of April 2026, the 20 pipelines of the QCAUS/PDPBioGen suites are undergoing consolidation for high-scale institutional research. Core 'Ford 2026' algorithms remain the proprietary IP of Tony Eugene Ford and the Future Ford Peace and Justice Foundation. Academic users at partner institutions are curr