🧬 Augmenting zero-shot mutant prediction by retrieval-based logits fusion. (ISMB/ECCB 2025)
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Apr 25, 2026 - Python
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homology-search
Here are 6 public repositories matching this topic...
Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval
protein homology-search protein-structure-prediction alphafold dense-retrieval protein-language-model msa-construction
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Jun 28, 2026 - Python
A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes
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Apr 20, 2023 - Python
📈 Using structure information only for protein homology detection (IEEE BIBM 2024).
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May 16, 2025 - Python
A snakemake workflow for iterative sequence profile searching using jackhmmer from the HMMer3 package.
protein-sequences similarity-search homology-search snakemake-workflow hmmer3 jackhmmer evalue-thresholds
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Apr 13, 2021 - Python
Searching proteins against a database of embeddings
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Dec 17, 2023 - Python
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