Repositories list

• bionanoimaging.github.io

  Public
  Repository for hosting the website files

  physicsjenamicroscopy+ 1

  physicsjenamicroscopyheintzmann

  SCSS

  •77 forks•44 stars•00 issues•00 pull requests•Updated Aug 21, 2026Aug 21, 2026

• FourierTools.jl

  Public
  Tools for working with Fourier space.

  interpolationjuliafourier+ 3

  interpolationjuliafourierarraysfftimageprocessing

  Julia

  •

  MIT License

  •1212 forks•6363 stars•99 issues•33 pull requests•Updated Aug 10, 2026Aug 10, 2026

• computingSeminar

  Public
  00 forks•33 stars•00 issues•00 pull requests•Updated Aug 3, 2026Aug 3, 2026

• View5D

  Public
  An image viewer for up to 5-dim data www.nanoimaging.de/View5D

  Java

  •

  MIT License

  •11 fork•66 stars•00 issues•00 pull requests•Updated May 27, 2026May 27, 2026

• NDTools.jl

  Public
  A lightweight package for utility functions for working with multi-dimensional data

  Julia

  •

  MIT License

  •11 fork•66 stars•55 issues•00 pull requests•Updated May 13, 2026May 13, 2026

• SeparableFunctions.jl

  Public
  Calculates multidimensional functions faster by exploiting their separability.

  Julia

  •

  MIT License

  •00 forks•88 stars•11 issue•00 pull requests•Updated Feb 14, 2026Feb 14, 2026

• NanoImagingPack

  Public
  Python pack for nanoimaging-related tasks

  Python

  •11 fork•11 star•00 issues•00 pull requests•Updated Aug 7, 2025Aug 7, 2025

• SecondHarmonicGeneration.jl

  Public
  A small simulation of the SHG of collagen 1, generated under various illumination conditions

  Julia

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jul 22, 2025Jul 22, 2025

• PSFDistiller.jl

  Public
  Distills a point spread function (PSF) from a measurement of beads by selecting local maxima that are separate enough from other ones.

  Julia

  •

  MIT License

  •33 forks•77 stars•11 issue•00 pull requests•Updated Jul 16, 2025Jul 16, 2025

• TiledViews.jl

  Public
  Allows an AbstractArray, to look like an AbstractArray with one more dimension and the tiles are represented along this dimension.

  Julia

  •

  MIT License

  •11 fork•1515 stars•00 issues•00 pull requests•Updated May 3, 2025May 3, 2025

• IndexFunArrays.jl

  Public
  Fun with indices (and functions on them)

  juliaarrayjulia-language

  juliaarrayjulia-language

  Julia

  •

  MIT License

  •11 fork•88 stars•33 issues•00 pull requests•Updated Mar 19, 2025Mar 19, 2025

• PSFToolbox-Matlab

  Public
  Includes various ways to calculate point spread functions (PSFs) with a focus on high NA fluorescence microscopy.

  MATLAB

  •

  GNU General Public License v2.0

  •22 forks•99 stars•11 issue•00 pull requests•Updated Dec 23, 2024Dec 23, 2024

• Scalable-Angular-Spectrum-Method-SAS

  Public
  Implementations of the Scalable Angular Spectrum Method

  Jupyter Notebook

  •

  MIT License

  •77 forks•7070 stars•11 issue•22 pull requests•Updated Jun 20, 2024Jun 20, 2024

• Image-Processing-In-Microscopy-2023-2024

  Public
  Julia

  •00 forks•00 stars•00 issues•00 pull requests•Updated Oct 18, 2023Oct 18, 2023

• DiscoverEpidemicModel.jl

  Public
  With this repo we provide a toolbox for automatic model discovery in epidemiology. We therefor start with Sars-CoV-2 modelling.

  Julia

  •

  MIT License

  •00 forks•00 stars•11 issue•1010 pull requests•Updated Jun 14, 2023Jun 14, 2023

• Khoros

  Public
  MATLAB

  •00 forks•11 star•00 issues•00 pull requests•Updated Apr 14, 2023Apr 14, 2023

• khorosBinLin64

  Public
  binaries for the khoros-inspired c-helpers

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 14, 2023Apr 14, 2023

• cameracalibration

  Public
  This is a Napari Plugin that calibrates your camera w.r.t. readnoise and gain

  Python

  •

  GNU General Public License v3.0

  •00 forks•11 star•00 issues•00 pull requests•Updated Dec 29, 2022Dec 29, 2022

• matlab_tools

  Public
  MATLAB

  •00 forks•33 stars•00 issues•00 pull requests•Updated Nov 23, 2022Nov 23, 2022

• Beamerscope-ANDROID

  Public
  Beamerscope-ANDROID

  C++

  •11 fork•22 stars•00 issues•11 pull request•Updated Oct 30, 2022Oct 30, 2022

• EM-guided_deconv

  Public
  MATLAB

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 11, 2022Aug 11, 2022

• JuliaConvolutionPerformance

  Public
  Performance comparison of different convolution approaches

  00 forks•00 stars•00 issues•00 pull requests•Updated Jul 6, 2022Jul 6, 2022

• ImageSharpness.jl

  Public
  Julia

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 17, 2022May 17, 2022

• Introduction_Image_Processing_Julia

  Public
  Material for 6th NORMIC Image Processing Workshop

  MIT License

  •00 forks•55 stars•00 issues•00 pull requests•Updated May 26, 2021May 26, 2021

• ShiftedArrays.jl

  Public
  Lazy shifted arrays for data analysis in Julia

  Julia

  •

  Other

  •1010 forks•00 stars•00 issues•00 pull requests•Updated Apr 10, 2021Apr 10, 2021

• cellSTORM-ANDROID

  Public
  Application to readout BW-frames from HUAWEI derived from Camera2RAW and FreedCAM

  Java

  •

  Apache License 2.0

  •22 forks•33 stars•00 issues•00 pull requests•Updated May 14, 2020May 14, 2020

• Tensorflow_MultipleScattering

  Public
  Repo to compare different single/multiple scattering algorithms computationally.

  Python

  •11 fork•22 stars•00 issues•00 pull requests•Updated Feb 20, 2020Feb 20, 2020

• SmartLense

  Public
  Android Application for controlling a LED-Matrix of a 3D-printed Microscope Framework.

  Java

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 12, 2019Aug 12, 2019

• cellSTORM-Tensorflow

  Public
  Image-to-Image network to localize dSTORM events in Tensorflow. Publication link: https://arxiv.org/abs/1804.06244

  Python

  •11 fork•77 stars•00 issues•00 pull requests•Updated Dec 15, 2018Dec 15, 2018

• cellSTORM_TENSORFLOW

  Public
  This is the APP to localize dSTORM experiments using an Android cellphone and an image-to-image GAN

  C++

  •00 forks•22 stars•00 issues•00 pull requests•Updated Dec 15, 2018Dec 15, 2018