This is a tool to calculate allele frequency of structural variants using a .bam file as input and allowing for the adjustment of allele frequencies based on tumour purity.
svSupport is under constant development. Please feel free to contact me, or raise an issue if you encounter any problems.
- Create clean environment with conda
pip install conda
conda create -n svSupport python==2.7.12
conda activate svSupport
- Install from github
git clone https://github.com/nriddiford/svSupport.git
cd svSupport
pip install .