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Include parameter for mageck to include list for control sgRNAs or control genes
bugSomething isn't workingSomething isn't workingStatus: Open.#79 In CCBR/CRISPIN;Update documentation
enhancementNew feature or requestNew feature or requestStatus: Open.#78 In CCBR/CRISPIN;Test suite expansion
enhancementNew feature or requestNew feature or requestStatus: Open.#76 In CCBR/CRISPIN;Add flag for mouse or human data as required for BAGEL and DrugZ essential genes list
bugSomething isn't workingSomething isn't workingStatus: Open.#74 In CCBR/CRISPIN;- Status: Open.
Missing CEG and NEG references: Mouse
bugSomething isn't workingSomething isn't workingStatus: Open.#53 In CCBR/CRISPIN;exp_namefor all outputsenhancementNew feature or requestNew feature or requestStatus: Open.#51 In CCBR/CRISPIN;document basic pipeline usage
documentationImprovements or additions to documentationImprovements or additions to documentationStatus: Open.#42 In CCBR/CRISPIN;Refactor samplesheet based on CHAMPAGNE
enhancementNew feature or requestNew feature or requestStatus: Open.#41 In CCBR/CRISPIN;Pipeline restarts even with resume flag at check_samplesheet
bugSomething isn't workingSomething isn't workingStatus: Open.#37 In CCBR/CRISPIN;add VISPR to the pipeline
enhancementNew feature or requestNew feature or requestStatus: Open.#36 In CCBR/CRISPIN;Update libraries to follow the sgRNA ID, the sequence, the gene
bugSomething isn't workingSomething isn't workingStatus: Open.#35 In CCBR/CRISPIN;