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Add new command line flags, enhance processing of existing ones.#614

Merged
drroe merged 24 commits into
Amber-MD:masterfrom
drroe:cmdline_flags
Jun 20, 2018
Merged

Add new command line flags, enhance processing of existing ones.#614
drroe merged 24 commits into
Amber-MD:masterfrom
drroe:cmdline_flags

DRR - Cpptraj: Remove hostname printout for now. I don't have the tim…

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