[2025-05] Bump dependencies

.github/workflows/pr.yaml

@@ -43,7 +43,7 @@ jobs:
       - run: |
           check/pytest -m 'not notebook and not slow'
 
-  pytest-dev-tools:
+  dev-tools:
     runs-on: ubuntu-24.04
     timeout-minutes: 15
     steps:
@@ -59,6 +59,7 @@ jobs:
           pip install --no-deps -e .
       - run: |
           check/pytest-dev-tools
+          check/mypy-dev-tools
 
   notebooks:
     runs-on: ubuntu-24.04
@@ -132,7 +133,7 @@ jobs:
       - name: Install dependencies
         run: |
           python -m pip install --upgrade pip
-          pip install -r dev_tools/requirements/envs/dev.env.txt
+          pip install -r dev_tools/requirements/envs/mypy.env.txt
           pip install --no-deps -e .
       - name: Set up problem matcher for Mypy output
         run: echo '::add-matcher::.github/problem-matchers/mypy.json'

check/mypy

@@ -15,7 +15,7 @@ cd "${topdir}" || exit $?
 CONFIG_FILE='mypy.ini'
 
 echo -e -n "\033[31m"
-mypy --config-file=dev_tools/conf/$CONFIG_FILE "$@" qualtran/  dev_tools/
+mypy --config-file=dev_tools/conf/$CONFIG_FILE "$@" qualtran/
 result=$?
 echo -e -n "\033[0m"
 

check/mypy-dev-tools

@@ -0,0 +1,22 @@
+#!/usr/bin/env bash
+
+################################################################################
+# Runs mypy on the dev_tools/ folder using a preconfigured mypy.ini file.
+#
+# Usage:
+#     check/mypy-dev-tool [--flags]
+################################################################################
+
+# Get the working directory to the repo root.
+thisdir="$(dirname "${BASH_SOURCE[0]}")" || exit $?
+topdir="$(git -C "${thisdir}" rev-parse --show-toplevel)" || exit $?
+cd "${topdir}" || exit $?
+
+CONFIG_FILE='mypy.ini'
+
+echo -e -n "\033[31m"
+mypy --config-file=dev_tools/conf/$CONFIG_FILE "$@" dev_tools/
+result=$?
+echo -e -n "\033[0m"
+
+exit ${result}

dev_tools/requirements/envs/dev.env.txt

@@ -16,6 +16,8 @@ anyio==4.9.0
     # via
     #   httpx
     #   jupyter-server
+    #   starlette
+    #   watchfiles
 anywidget==0.9.18
     # via qsharp-widgets
 appdirs==1.4.4
@@ -47,7 +49,7 @@ attrs==25.3.0
     #   jsonschema
     #   jupyter-cache
     #   referencing
-autograd==1.7.0
+autograd==1.8.0
     # via pennylane
 autoray==0.7.1
     # via
@@ -79,7 +81,7 @@ cachetools==5.5.2
     # via
     #   -r deps/runtime.txt
     #   pennylane
-certifi==2025.1.31
+certifi==2025.4.26
     # via
     #   httpcore
     #   httpx
@@ -88,7 +90,7 @@ cffi==1.17.1
     # via
     #   argon2-cffi-bindings
     #   cryptography
-charset-normalizer==3.4.1
+charset-normalizer==3.4.2
     # via requests
 cirq-core==1.4.0
     # via
@@ -100,6 +102,9 @@ click==8.1.8
     #   flask
     #   jupyter-cache
     #   pip-tools
+    #   uvicorn
+colorama==0.4.6
+    # via sphinx-autobuild
 comm==0.2.2
     # via
     #   ipykernel
@@ -110,13 +115,13 @@ cotengra==0.7.2
     # via quimb
 coverage[toml]==7.8.0
     # via pytest-cov
-cryptography==44.0.2
+cryptography==44.0.3
     # via secretstorage
 cycler==0.12.1
     # via matplotlib
 cytoolz==1.0.1
     # via quimb
-dash==3.0.3
+dash==3.0.4
     # via -r deps/runtime.txt
 debugpy==1.8.14
     # via ipykernel
@@ -166,7 +171,7 @@ fqdn==1.5.1
     # via jsonschema
 fxpmath==0.4.9
     # via -r deps/runtime.txt
-galois==0.4.5
+galois==0.4.6
     # via -r deps/runtime.txt
 gast==0.6.0
     # via diastatic-malt
@@ -178,13 +183,15 @@ grpcio==1.71.0
     # via grpcio-tools
 grpcio-tools==1.71.0
     # via -r deps/packaging.txt
-h11==0.14.0
-    # via httpcore
+h11==0.16.0
+    # via
+    #   httpcore
+    #   uvicorn
 h5py==3.13.0
     # via
     #   openfermion
     #   pyscf
-httpcore==1.0.8
+httpcore==1.0.9
     # via httpx
 httpx==0.28.1
     # via jupyterlab
@@ -198,7 +205,7 @@ idna==3.10
     #   requests
 imagesize==1.4.1
     # via sphinx
-importlib-metadata==8.6.1
+importlib-metadata==8.7.0
     # via
     #   dash
     #   jupyter-cache
@@ -211,13 +218,13 @@ ipykernel==6.29.5
     #   -r deps/pytest.txt
     #   jupyterlab
     #   myst-nb
-ipython==8.35.0
+ipython==8.36.0
     # via
     #   -r deps/runtime.txt
     #   ipykernel
     #   ipywidgets
     #   myst-nb
-ipywidgets==8.1.6
+ipywidgets==8.1.7
     # via
     #   -r deps/docs.txt
     #   -r deps/runtime.txt
@@ -268,7 +275,7 @@ jsonschema[format-nongpl]==4.23.0
     #   jupyter-events
     #   jupyterlab-server
     #   nbformat
-jsonschema-specifications==2024.10.1
+jsonschema-specifications==2025.4.1
     # via jsonschema
 jupyter-cache==1.0.1
     # via myst-nb
@@ -299,15 +306,15 @@ jupyter-server==2.15.0
     #   notebook-shim
 jupyter-server-terminals==0.5.3
     # via jupyter-server
-jupyterlab==4.4.0
+jupyterlab==4.4.2
     # via notebook
 jupyterlab-pygments==0.3.0
     # via nbconvert
 jupyterlab-server==2.27.3
     # via
     #   jupyterlab
     #   notebook
-jupyterlab-widgets==3.0.14
+jupyterlab-widgets==3.0.15
     # via ipywidgets
 keyring==25.6.0
     # via twine
@@ -327,7 +334,7 @@ markupsafe==3.0.2
     #   jinja2
     #   nbconvert
     #   werkzeug
-matplotlib==3.10.1
+matplotlib==3.10.3
     # via
     #   -r deps/runtime.txt
     #   ase
@@ -366,7 +373,7 @@ myst-nb==1.2.0
     # via -r deps/docs.txt
 myst-parser==4.0.1
     # via myst-nb
-narwhals==1.35.0
+narwhals==1.38.2
     # via plotly
 nbclient==0.10.2
     # via
@@ -400,7 +407,7 @@ networkx==3.4.2
     #   pennylane
 nh3==0.2.21
     # via readme-renderer
-notebook==7.4.0
+notebook==7.4.2
     # via
     #   -r deps/dev-tools.txt
     #   -r deps/runtime.txt
@@ -468,19 +475,19 @@ parso==0.8.4
     # via jedi
 pathspec==0.12.1
     # via black
-pennylane==0.41.0
+pennylane==0.41.1
     # via
     #   -r deps/runtime.txt
     #   pennylane-lightning
-pennylane-lightning==0.41.0
+pennylane-lightning==0.41.1
     # via pennylane
 pexpect==4.9.0
     # via ipython
 pillow==11.2.1
     # via matplotlib
 pip-tools==7.4.1
     # via -r deps/pip-tools.txt
-platformdirs==4.3.7
+platformdirs==4.3.8
     # via
     #   black
     #   jupyter-core
@@ -506,7 +513,7 @@ psutil==7.0.0
     # via
     #   ipykernel
     #   quimb
-psygnal==0.12.0
+psygnal==0.13.0
     # via anywidget
 ptyprocess==0.7.0
     # via
@@ -518,15 +525,15 @@ pure-eval==0.2.3
     # via stack-data
 pycparser==2.22
     # via cffi
-pydantic==2.11.3
+pydantic==2.11.4
     # via
     #   bartiq
     #   qref
-pydantic-core==2.33.1
+pydantic-core==2.33.2
     # via pydantic
 pydata-sphinx-theme==0.16.1
     # via -r deps/docs.txt
-pydot==3.0.4
+pydot==4.0.0
     # via -r deps/runtime.txt
 pygments==2.19.1
     # via
@@ -537,7 +544,7 @@ pygments==2.19.1
     #   readme-renderer
     #   rich
     #   sphinx
-pylint==3.3.6
+pylint==3.3.7
     # via -r deps/pylint.txt
 pyparsing==3.1.4
     # via
@@ -593,9 +600,9 @@ qref==0.9.0
     # via
     #   -r deps/runtime.txt
     #   bartiq
-qsharp==1.15.0
+qsharp==1.16.0
     # via -r deps/runtime.txt
-qsharp-widgets==1.15.0
+qsharp-widgets==1.16.0
     # via -r deps/runtime.txt
 quimb==1.10.0
     # via -r deps/runtime.txt
@@ -638,7 +645,7 @@ rpds-py==0.24.0
     #   referencing
 rustworkx==0.16.0
     # via pennylane
-scipy==1.15.2
+scipy==1.15.3
     # via
     #   ase
     #   cirq-core
@@ -662,7 +669,7 @@ six==1.17.0
     #   rfc3339-validator
 sniffio==1.3.1
     # via anyio
-snowballstemmer==2.2.0
+snowballstemmer==3.0.0.1
     # via sphinx
 sortedcontainers==2.4.0
     # via cirq-core
@@ -675,6 +682,9 @@ sphinx==8.1.3
     #   myst-nb
     #   myst-parser
     #   pydata-sphinx-theme
+    #   sphinx-autobuild
+sphinx-autobuild==2024.10.3
+    # via -r deps/docs.txt
 sphinxcontrib-applehelp==2.0.0
     # via sphinx
 sphinxcontrib-devhelp==2.0.0
@@ -691,6 +701,8 @@ sqlalchemy==2.0.40
     # via jupyter-cache
 stack-data==0.6.3
     # via ipython
+starlette==0.46.2
+    # via sphinx-autobuild
 sympy==1.12.1
     # via
     #   -r deps/mypy.txt
@@ -704,7 +716,7 @@ tensorflow-docs==2023.5.24.56664
     # via
     #   -r deps/docs.txt
     #   -r deps/pylint.txt
-termcolor==3.0.1
+termcolor==3.1.0
     # via diastatic-malt
 terminado==0.18.1
     # via
@@ -760,7 +772,7 @@ traitlets==5.14.3
     #   nbformat
 twine==6.1.0
     # via -r deps/packaging.txt
-types-protobuf==5.29.1.20250403
+types-protobuf==6.30.2.20250506
     # via mypy-protobuf
 types-python-dateutil==2.9.0.20241206
     # via arrow
@@ -789,6 +801,7 @@ typing-extensions==4.13.2
     #   rich
     #   sqlalchemy
     #   typing-inspection
+    #   uvicorn
 typing-inspection==0.4.0
     # via pydantic
 tzdata==2025.2
@@ -799,8 +812,12 @@ urllib3==2.4.0
     # via
     #   requests
     #   twine
-virtualenv==20.30.0
+uvicorn==0.34.2
+    # via sphinx-autobuild
+virtualenv==20.31.2
     # via -r deps/packaging.txt
+watchfiles==1.0.5
+    # via sphinx-autobuild
 wcwidth==0.2.13
     # via prompt-toolkit
 webcolors==24.11.1
@@ -811,6 +828,8 @@ webencodings==0.5.1
     #   tinycss2
 websocket-client==1.8.0
     # via jupyter-server
+websockets==15.0.1
+    # via sphinx-autobuild
 werkzeug==3.0.6
     # via
     #   dash