Dids & invite refactor

.claude/settings.local.json

@@ -0,0 +1,94 @@
+{
+  "permissions": {
+    "allow": [
+      "mcp__chrome-devtools__new_page",
+      "mcp__chrome-devtools__take_screenshot",
+      "Bash(cargo test --package atomic-server --test dht_resolve --no-run)",
+      "Bash(cargo test --package atomic-server --test dht_resolve -- --nocapture)",
+      "Bash(pnpm test)",
+      "Bash(cargo build -p atomic-server)",
+      "Bash(grep -n \"async fn get_resource_extended\" /Users/joep/dev/github/atomicdata-dev/atomic-server/lib/src/*.rs)",
+      "Bash(grep -n \"async fn query\\\\|fn query\" /Users/joep/dev/github/atomicdata-dev/atomic-server/server/src/*.rs)",
+      "Bash(grep -E \"\\\\.\\(rs\\)$\")",
+      "Bash(grep -n \"pub async fn handle_get_resource\\\\|pub async fn post_commit\" /Users/joep/dev/github/atomicdata-dev/atomic-server/server/src/handlers/*.rs)",
+      "Bash(cargo tauri --version)",
+      "Bash(echo $ANDROID_HOME)",
+      "Bash(adb devices)",
+      "Bash(echo $PATH)",
+      "Bash(cargo build:*)",
+      "Bash(cargo test:*)",
+      "Bash(for f:*)",
+      "Bash(do echo:*)",
+      "Read(//Users/joep/dev/github/atomicdata-dev/atomic-server/**)",
+      "Bash(done)",
+      "Bash(npx tsc:*)",
+      "mcp__charlotte__charlotte_screenshot",
+      "Bash(npx vitest:*)",
+      "mcp__charlotte__charlotte_navigate",
+      "Bash(npx playwright:*)",
+      "Bash(npm run:*)",
+      "Bash(xargs grep:*)",
+      "Bash(find /Users/joep/dev/github/atomicdata-dev/atomic-server/browser/data-browser/src/components/Dialog -name *.ts -o -name *.tsx)",
+      "mcp__charlotte__charlotte_tab_open",
+      "mcp__charlotte__charlotte_click",
+      "mcp__charlotte__charlotte_find",
+      "Bash(pnpm exec:*)",
+      "Bash(curl -s http://localhost:9883)",
+      "Bash(curl -s http://localhost:5173)",
+      "mcp__charlotte__charlotte_tools",
+      "mcp__charlotte__charlotte_observe",
+      "mcp__charlotte__charlotte_type",
+      "Bash(while read:*)",
+      "Bash(do if:*)",
+      "Bash(then echo:*)",
+      "Bash(pnpm run:*)",
+      "Bash(ls data-browser/tsconfig*.json)",
+      "Bash(grep -r \"localResource\\\\|new.*resource\\\\|uncommitted\" /Users/joep/dev/github/atomicdata-dev/atomic-server/browser/data-browser/src/chunks/TableEditor --include=*.ts --include=*.tsx)",
+      "Bash(grep -E \"\\\\.\\(tsx?|jsx?\\)$\")",
+      "Bash(grep -E \"\\\\.ts$\")",
+      "mcp__charlotte__charlotte_tabs",
+      "mcp__chrome-devtools__press_key",
+      "mcp__chrome-devtools__type_text",
+      "mcp__chrome-devtools__evaluate_script",
+      "mcp__chrome-devtools__list_pages",
+      "Bash(cargo check:*)",
+      "WebFetch(domain:loro.dev)",
+      "WebFetch(domain:github.com)",
+      "Bash(export PATH=\"$HOME/.cargo/bin:$PATH\")",
+      "Bash(cargo tree:*)",
+      "Bash(RUSTFLAGS='--cfg getrandom_backend=\"wasm_js\"' cargo check -p atomic_lib --features db,wasm --target wasm32-unknown-unknown)",
+      "Bash(git checkout:*)",
+      "Bash(export PATH=\"/opt/homebrew/bin:$PATH\")",
+      "mcp__charlotte__charlotte_click_at",
+      "Bash(curl -s -o /dev/null -w \"%{http_code}\" http://localhost:5173/)",
+      "Bash(node -e ':*)",
+      "Bash(pnpm build:wasm)",
+      "Bash(node -e \"const {dataBrowser} = require\\('./lib/dist/index.js'\\); console.log\\(dataBrowser.classes.table, dataBrowser.classes.chatroom\\);\")",
+      "Bash(node --input-type=module -e \"import {dataBrowser} from './lib/dist/index.js'; console.log\\(dataBrowser.classes.table, dataBrowser.classes.chatroom\\);\")",
+      "Bash(npx tsx -e ':*)",
+      "Bash(node --experimental-vm-modules src/loro-size-test.mjs)",
+      "Bash(grep -E \"^-.*tsx$\")",
+      "Bash(ls browser/e2e/tests/*.spec.ts)",
+      "Bash(curl -s -o /dev/null -w \"%{http_code}\" http://localhost:9883/)",
+      "Bash(curl -s -H \"Accept: application/ad+json\" \"http://localhost:9883/invites?token=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\")",
+      "Bash(python3 -m json.tool)",
+      "Bash(echo \"Checking types...\" ls /Users/joep/dev/github/atomicdata-dev/atomic-server/browser/node_modules/loro-crdt/dist/*.d.ts)",
+      "Read(//Users/joep/dev/flutter/bin/**)",
+      "Read(//Users/joep/flutter/bin/**)",
+      "Read(//opt/flutter/bin/**)",
+      "Read(//Users/joep/**)",
+      "Bash(mise which:*)",
+      "Bash(mise ls:*)",
+      "Bash(export PATH=\"/Users/joep/.local/share/mise/installs/flutter/3.22.1-stable/bin:$PATH\")",
+      "Bash(flutter build:*)",
+      "Bash(cargo doc:*)",
+      "Bash(grep -rn \"pub fn.*change\\\\|pub fn.*history\\\\|pub fn.*oplog\\\\|get_all_change\" /Users/joep/.cargo/registry/src/*/loro-1.10.8/src/)",
+      "WebSearch",
+      "Bash(find /Users/joep/.cargo/registry/src/index.crates.io-1949cf8c6b5b557f/simple-dns-0.9.3/ -name \"*.rs\" -exec grep -l \"enum RData\" {} \\\\;)",
+      "Bash(cargo test *)",
+      "WebFetch(domain:docs.iroh.computer)",
+      "Bash(grep -v \"^W/atomic\\\\|^$\")",
+      "Bash(kill 85810 85821)"
+    ]
+  }
+}

.dagger/.gitattributes

@@ -1 +1,2 @@
 /sdk/** linguist-generated
+tar

.dagger/src/index.ts

@@ -85,7 +85,7 @@ export class AtomicServer {
 
   @func()
   async jsLint(): Promise<string> {
-    const depsContainer = this.jsBuild(this.source.directory('browser'));
+    const depsContainer = this.jsBuild();
     return depsContainer
       .withWorkdir('/app')
       .withExec(['pnpm', 'run', 'lint'])
@@ -94,7 +94,7 @@ export class AtomicServer {
 
   @func()
   async jsTest(): Promise<string> {
-    const depsContainer = this.jsBuild(this.source.directory('browser'));
+    const depsContainer = this.jsBuild();
     return depsContainer
       .withWorkdir('/app')
       .withExec(['pnpm', 'run', 'test'])
@@ -154,7 +154,7 @@ export class AtomicServer {
 
   @func()
   typedocPublish(@argument() netlifyAuthToken: Secret): Promise<string> {
-    const browserDir = this.jsBuild(this.source.directory('browser'));
+    const browserDir = this.jsBuild();
     return browserDir
       .withWorkdir('/app')
       .withSecretVariable('NETLIFY_AUTH_TOKEN', netlifyAuthToken)
@@ -163,9 +163,8 @@ export class AtomicServer {
   }
 
   @func()
-  private jsBuild(
-    @argument({ ignore: ['**/e2e'] }) source: Directory,
-  ): Container {
+  private jsBuild(): Container {
+    const browser = this.source.directory('browser');
     // Create a container with PNPM installed
     const pnpmContainer = dag
       .container()
@@ -177,30 +176,39 @@ export class AtomicServer {
 
     // Copy workspace files first for caching node_modules.
     const workspaceContainer = pnpmContainer
-      .withFile('/app/package.json', source.file('package.json'))
-      .withFile('/app/pnpm-lock.yaml', source.file('pnpm-lock.yaml'))
-      .withFile('/app/pnpm-workspace.yaml', source.file('pnpm-workspace.yaml'))
+      .withFile('/app/package.json', browser.file('package.json'))
+      .withFile('/app/pnpm-lock.yaml', browser.file('pnpm-lock.yaml'))
+      .withFile('/app/pnpm-workspace.yaml', browser.file('pnpm-workspace.yaml'))
       .withFile(
         '/app/data-browser/package.json',
-        source.file('data-browser/package.json'),
+        browser.file('data-browser/package.json'),
       )
-      .withFile('/app/lib/package.json', source.file('lib/package.json'))
-      .withFile('/app/react/package.json', source.file('react/package.json'))
-      .withFile('/app/svelte/package.json', source.file('svelte/package.json'))
-      .withFile('/app/cli/package.json', source.file('cli/package.json'))
+      .withFile('/app/lib/package.json', browser.file('lib/package.json'))
+      .withFile('/app/react/package.json', browser.file('react/package.json'))
+      .withFile('/app/svelte/package.json', browser.file('svelte/package.json'))
+      .withFile('/app/cli/package.json', browser.file('cli/package.json'))
       .withFile(
         '/app/create-template/package.json',
-        source.file('create-template/package.json'),
+        browser.file('create-template/package.json'),
       )
+      .withFile('/app/plugin/package.json', browser.file('plugin/package.json'))
+      .withFile('/app/e2e/package.json', browser.file('e2e/package.json'))
       // .withMountedCache('/app/.pnpm-store', dag.cacheVolume('pnpm-store'))
       .withExec([
         'sh',
         '-c',
         'yes | pnpm install --frozen-lockfile --shamefully-hoist',
       ]);
 
-    // Copy the source so installed dependencies persist in the container
-    const sourceContainer = workspaceContainer.withDirectory('/app', source);
+    // data-browser bootstrap JSON lives in repo-root lib/defaults. Vite resolves ../../../lib
+    // from data-browser/src to filesystem /lib if /app is only browser — do not mount there
+    // (it overwrites OS /lib). Mount alongside browser and resolve via alias in vite.config.
+    const sourceContainer = workspaceContainer
+      .withDirectory('/app', browser)
+      .withDirectory(
+        '/app/lib-defaults',
+        this.source.directory('lib/defaults'),
+      );
 
     // Build all packages since they may depend on each other's built artifacts
     return sourceContainer.withExec(['pnpm', 'run', 'build']);
@@ -238,9 +246,7 @@ export class AtomicServer {
       .withWorkdir('/code')
       .withExec(['cargo', 'fetch']);
 
-    const browserDir = this.jsBuild(this.source.directory('browser')).directory(
-      '/app/data-browser/dist',
-    );
+    const browserDir = this.jsBuild().directory('/app/data-browser/dist');
     const containerWithAssets = sourceContainer.withDirectory(
       '/code/server/assets_tmp',
       browserDir,
@@ -385,7 +391,7 @@ export class AtomicServer {
 
   @func()
   async endToEnd(@argument() netlifyAuthToken: Secret): Promise<string> {
-    const browserContainer = this.jsBuild(this.source.directory('browser'));
+    const browserContainer = this.jsBuild();
 
     // Setup Playwright container - debug and fix package manager
     const playwrightContainer = dag
@@ -431,7 +437,6 @@ export class AtomicServer {
         browserContainer.directory('/app/node_modules'),
       )
       .withEnvVariable('LANGUAGE', 'en_GB')
-      .withEnvVariable('DELETE_PREVIOUS_TEST_DRIVES', 'false')
       .withEnvVariable('FRONTEND_URL', `http://${ATOMIC_DOMAIN}:9883`)
       .withEnvVariable('SERVER_URL', `http://${ATOMIC_DOMAIN}:9883`)
       .withServiceBinding('atomic', this.atomicService())

.gitignore

@@ -8,3 +8,5 @@ trace-*.json
 artifact
 server/assets_tmp
 .netlify
+scratchpad
+.claude

.vscode/settings.json

@@ -24,12 +24,17 @@
   "editor.codeActionsOnSave": {
     "source.fixAll.eslint": "explicit"
   },
-  "eslint.workingDirectories": [{ "directory": "browser" }],
+  "eslint.workingDirectories": [
+    {
+      "directory": "browser"
+    }
+  ],
   "typescript.preferences.preferTypeOnlyAutoImports": true,
   "rustTestExplorer.rootCargoManifestFilePath": "./Cargo.toml",
   // This won't work in multi-root workspaces, could be fixed by using a rust-analyzer.toml once there is some more documentation on that.
   // For now you need to set this in your own vscode settings file.
   "rust-analyzer.cargo.extraEnv": {
     "ATOMICSERVER_SKIP_JS_BUILD": "true"
-  }
+  },
+  "java.configuration.updateBuildConfiguration": "automatic"
 }

.vscode/tasks.json

@@ -50,9 +50,9 @@
 			"group": "test"
 		},
 		{
-			"label": "run jaeger for tracing (using docker)",
+			"label": "run SigNoz for tracing locally (using docker)",
 			"type": "shell",
-			"command": "docker run -d -e COLLECTOR_ZIPKIN_HTTP_PORT=9411 -p 5775:5775/udp -p 6831:6831/udp -p 6832:6832/udp -p 5778:5778 -p 16686:16686 -p 14268:14268 -p 9411:9411 jaegertracing/all-in-one",
+			"command": "git clone https://github.com/SigNoz/signoz.git /tmp/signoz 2>/dev/null || true && cd /tmp/signoz/deploy && docker compose up",
 			"group": "none",
 			"problemMatcher": []
 		},

.zed/settings.json

@@ -0,0 +1,22 @@
+{
+  "lsp": {
+    "oxlint": {
+      "initialization_options": {
+        "settings": {
+          "run": "onType",
+          "disableNestedConfig": false,
+          "fixKind": "safe_fix",
+          "unusedDisableDirectives": "deny"
+        }
+      }
+    },
+    "oxfmt": {
+      "initialization_options": {
+        "settings": {
+          "fmt.configPath": "browser/.oxfmtrc.json",
+          "run": "onSave"
+        }
+      }
+    }
+  }
+}

.zed/tasks.json

@@ -0,0 +1,57 @@
+[
+  {
+    "label": "run atomic-server (cargo run)",
+    "command": "cargo run --bin atomic-server",
+    "cwd": "$ZED_WORKTREE_ROOT"
+  },
+  {
+    "label": "test atomic-server (cargo nextest run)",
+    "command": "cargo nextest run",
+    "cwd": "$ZED_WORKTREE_ROOT"
+  },
+  {
+    "label": "run data-browser dev server (pnpm start)",
+    "command": "pnpm start",
+    "cwd": "$ZED_WORKTREE_ROOT/browser"
+  },
+  {
+    "label": "test data-browser e2e",
+    "command": "pnpm test-e2e",
+    "cwd": "$ZED_WORKTREE_ROOT/browser"
+  },
+  {
+    "label": "test end-to-end / E2E (npm playwright)",
+    "command": "cd server/e2e_tests/ && npm i && npm run test",
+    "cwd": "$ZED_WORKTREE_ROOT"
+  },
+  {
+    "label": "build desktop atomic-server tauri",
+    "command": "cargo tauri build",
+    "cwd": "$ZED_WORKTREE_ROOT/desktop"
+  },
+  {
+    "label": "dev desktop atomic-server tauri",
+    "command": "cargo tauri dev",
+    "cwd": "$ZED_WORKTREE_ROOT/desktop"
+  },
+  {
+    "label": "benchmark criterion atomic-server",
+    "command": "cargo criterion",
+    "cwd": "$ZED_WORKTREE_ROOT/server"
+  },
+  {
+    "label": "docs atomic data (mdbook serve)",
+    "command": "mdbook serve",
+    "cwd": "$ZED_WORKTREE_ROOT/docs"
+  },
+  {
+    "label": "run SigNoz for tracing locally (docker)",
+    "command": "git clone https://github.com/SigNoz/signoz.git /tmp/signoz 2>/dev/null || true && cd /tmp/signoz/deploy && docker compose up",
+    "cwd": "$ZED_WORKTREE_ROOT"
+  },
+  {
+    "label": "dagger call rust-build",
+    "command": "dagger call rust-build",
+    "cwd": "$ZED_WORKTREE_ROOT"
+  }
+]