fix!: update environment

johanneskoester · johanneskoester · commit b21b0248ab28 · 2025-07-07T17:11:35.000+02:00
diff --git a/.gitattributes b/.gitattributes
@@ -0,0 +1,2 @@
+# SCM syntax highlighting & preventing 3-way merges
+pixi.lock merge=binary linguist-language=YAML linguist-generated=true
diff --git a/.gitignore b/.gitignore
@@ -0,0 +1,4 @@
+
+# pixi environments
+.pixi
+*.egg-info
diff --git a/environment.yaml b/environment.yaml
@@ -2,16 +2,12 @@ channels:
   - conda-forge
   - bioconda
 dependencies:
-  - snakemake-minimal >=8.4.4
+  - snakemake-minimal >=9.7.1
   - jinja2
   - matplotlib
   - graphviz
   - bcftools >=1.19
   - samtools >=1.19
   - bwa ~=0.7.17
   - pygments
-  - pip:
-    #  at the time of writing - 7. Feb 24 - pysam on bioconda will require
-    #  a lower python version than snakemake, install pysam
-    #  using pip
-    - pysam ==0.22
+  - pysam =0.22

Original file line number	Diff line number	Diff line change
`@@ -0,0 +1,2 @@`
	`1`	`+# SCM syntax highlighting & preventing 3-way merges`
	`2`	`+pixi.lock merge=binary linguist-language=YAML linguist-generated=true`
-Original file line number
+Diff line change
@@ @@ -0,0 +1,4 @@ @@
++
 +# pixi environments
 +.pixi
 +*.egg-info