[pre-commit.ci] pre-commit autoupdate #168
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # Copyright (C) 2023 Roberto Rossini (roberros@uio.no) | |
| # SPDX-License-Identifier: MIT | |
| name: Build wheels | |
| on: | |
| workflow_dispatch: | |
| push: | |
| branches: [main] | |
| paths: | |
| - ".github/workflows/build-wheels.yml" | |
| - "cmake/**" | |
| - "src/**" | |
| - "test/*.py" | |
| - "utils/devel/stubgen.py" | |
| - "CMakeLists.txt" | |
| - "conanfile.py" | |
| - "pyproject.toml" | |
| pull_request: | |
| paths: | |
| - ".github/workflows/build-wheels.yml" | |
| - "cmake/**" | |
| - "src/**" | |
| - "test/*.py" | |
| - "utils/devel/stubgen.py" | |
| - "CMakeLists.txt" | |
| - "conanfile.py" | |
| - "pyproject.toml" | |
| release: | |
| types: | |
| - published | |
| # https://stackoverflow.com/a/72408109 | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }} | |
| cancel-in-progress: true | |
| defaults: | |
| run: | |
| shell: bash | |
| permissions: | |
| contents: read | |
| jobs: | |
| matrix-factory: | |
| name: Generate job matrix | |
| runs-on: ubuntu-latest | |
| outputs: | |
| matrix: ${{ steps.set-result.outputs.matrix }} | |
| steps: | |
| - name: Checkout repo | |
| uses: actions/checkout@v6 | |
| with: | |
| fetch-depth: 0 | |
| - name: Setup Python | |
| uses: actions/setup-python@v6 | |
| with: | |
| python-version: "3.13" | |
| - name: Install cibuildwheel | |
| run: pip install 'cibuildwheel>=2.21' | |
| - name: Generate matrix | |
| id: set-result | |
| run: | | |
| CIBW_ARCHS_LINUX=x86_64 cibuildwheel \ | |
| --print-build-identifiers \ | |
| --platform linux | | |
| jq -nRc '{"wheel-config": inputs, "os": "ubuntu-24.04", "arch": "x86_64"}' | | |
| tee configs.json | |
| if [ '${{ github.event_name }}' != 'pull_request' ]; then | |
| CIBW_ARCHS_LINUX=aarch64 cibuildwheel \ | |
| --print-build-identifiers \ | |
| --platform linux | | |
| jq -nRc '{"wheel-config": inputs, "os": "ubuntu-24.04-arm", "arch": "aarch64"}' | | |
| tee -a configs.json | |
| fi | |
| CIBW_ARCHS_MACOS=x86_64 cibuildwheel \ | |
| --print-build-identifiers \ | |
| --platform macos | | |
| jq -nRc '{"wheel-config": inputs, "os": "macos-15-intel", "arch": "x86_64"}' | | |
| tee -a configs.json | |
| CIBW_ARCHS_MACOS=arm64 cibuildwheel \ | |
| --print-build-identifiers \ | |
| --platform macos | | |
| jq -nRc '{"wheel-config": inputs, "os": "macos-26", "arch": "arm64"}' | | |
| tee -a configs.json | |
| CIBW_ARCHS_WINDOWS=AMD64 cibuildwheel \ | |
| --print-build-identifiers \ | |
| --platform windows | | |
| jq -nRc '{"wheel-config": inputs, "os": "windows-2022", "arch": "AMD64"}' | | |
| tee -a configs.json | |
| MATRIX="$(jq -sc < configs.json)" | |
| echo "matrix={\"include\": $MATRIX }" | tee -a "$GITHUB_OUTPUT" | |
| build-deps-linux-x86: | |
| name: Build Conan deps (Linux; x86_64) | |
| uses: paulsengroup/hictkpy/.github/workflows/build-conan-deps-linux.yml@b86ff92565b4b8c27f58427468e6471a23de5de3 | |
| with: | |
| os: ubuntu-24.04 | |
| arch: x86_64 | |
| cppstd: 23 | |
| conan-version: "2.21.*" | |
| image-version: 2025.10.19-2 | |
| ref: main | |
| build-deps-linux-arm64: | |
| name: Build Conan deps (Linux; arm64) | |
| uses: paulsengroup/hictkpy/.github/workflows/build-conan-deps-linux.yml@b86ff92565b4b8c27f58427468e6471a23de5de3 | |
| with: | |
| os: ubuntu-24.04-arm | |
| arch: aarch64 | |
| cppstd: 23 | |
| conan-version: "2.21.*" | |
| image-version: 2025.10.19-2 | |
| ref: main | |
| build-deps-macos-x86: | |
| name: Build Conan deps (macOS; x86_64) | |
| uses: paulsengroup/hictkpy/.github/workflows/build-conan-deps-macos.yml@b86ff92565b4b8c27f58427468e6471a23de5de3 | |
| with: | |
| conan-version: "2.21.*" | |
| cppstd: 23 | |
| os: macos-15-intel | |
| ref: main | |
| build-deps-macos-arm64: | |
| name: Build Conan deps (macOS; arm64) | |
| uses: paulsengroup/hictkpy/.github/workflows/build-conan-deps-macos.yml@b86ff92565b4b8c27f58427468e6471a23de5de3 | |
| with: | |
| conan-version: "2.21.*" | |
| cppstd: 23 | |
| os: macos-26 | |
| ref: main | |
| build-deps-windows-x86: | |
| name: Build Conan deps (Windows; x86_64) | |
| uses: paulsengroup/hictkpy/.github/workflows/build-conan-deps-windows.yml@b86ff92565b4b8c27f58427468e6471a23de5de3 | |
| with: | |
| conan-version: "2.21.*" | |
| cppstd: 23 | |
| os: windows-2022 | |
| ref: main | |
| # required to support Windows 10 LTSC 2019 (1809) | |
| # EOL: https://learn.microsoft.com/en-us/lifecycle/products/windows-10-enterprise-ltsc-2019 | |
| winsdk-version: "10.0.17763.0" | |
| build-sdist: | |
| name: Build SDist | |
| runs-on: ubuntu-latest | |
| env: | |
| CC: "clang" | |
| CXX: "clang++" | |
| steps: | |
| - uses: actions/checkout@v6 | |
| with: | |
| fetch-depth: 0 | |
| - name: Install uv | |
| uses: astral-sh/setup-uv@1e862dfacbd1d6d858c55d9b792c756523627244 # v7.1.4 | |
| with: | |
| python-version: 3.14 | |
| activate-environment: true | |
| enable-cache: true | |
| - name: Build SDist | |
| run: uv build --sdist | |
| - name: Check metadata | |
| run: uvx twine check dist/* | |
| - name: Generate cache key | |
| id: cache-key | |
| run: | | |
| hash="${{ hashFiles('conanfile.py') }}" | |
| echo "conan-key=sdist-$hash" >> "$GITHUB_OUTPUT" | |
| - name: Restore Conan cache | |
| id: cache-conan | |
| uses: actions/cache/restore@v4 | |
| with: | |
| key: conan-${{ steps.cache-key.outputs.conan-key }} | |
| path: ${{ env.CONAN_HOME }}/p | |
| - name: Clean Conan cache (post build) | |
| if: steps.cache-conan.outputs.cache-hit != 'true' | |
| run: rm -rf '${{ env.CONAN_HOME }}/p' | |
| - name: Test SDist | |
| run: | | |
| uv pip install -v dist/hictkpy*.tar.gz | |
| python -c 'import hictkpy; print(hictkpy.__version__)' | |
| - name: Clean Conan cache (post build) | |
| if: steps.cache-conan.outputs.cache-hit != 'true' | |
| run: | | |
| uv tool run 'conan>2' cache clean "*" --build | |
| uv tool run 'conan>2' cache clean "*" --download | |
| uv tool run 'conan>2' cache clean "*" --source | |
| - name: Save Conan cache | |
| uses: actions/cache/save@v4 | |
| if: steps.cache-conan.outputs.cache-hit != 'true' | |
| with: | |
| key: conan-${{ steps.cache-key.outputs.conan-key }} | |
| path: ${{ env.CONAN_HOME }}/p | |
| - uses: actions/upload-artifact@v5 | |
| with: | |
| name: sdist | |
| path: dist/hictkpy*.tar.gz | |
| build-wheels: | |
| name: Build Wheels | |
| needs: | |
| - matrix-factory | |
| - build-deps-linux-x86 | |
| - build-deps-linux-arm64 | |
| - build-deps-macos-x86 | |
| - build-deps-macos-arm64 | |
| - build-deps-windows-x86 | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: ${{ fromJson(needs.matrix-factory.outputs.matrix) }} | |
| steps: | |
| - uses: actions/checkout@v6 | |
| with: | |
| fetch-depth: 0 | |
| - name: Add devtools to PATH (Windows) | |
| if: startsWith(matrix.os, 'windows') | |
| uses: ilammy/msvc-dev-cmd@0b201ec74fa43914dc39ae48a89fd1d8cb592756 # v1.13.0 | |
| with: | |
| sdk: ${{ needs.build-deps-windows-x86.outputs.winsdk-version }} | |
| - name: Install uv | |
| if: ${{ !startsWith(matrix.os, 'ubuntu') }} | |
| uses: astral-sh/setup-uv@1e862dfacbd1d6d858c55d9b792c756523627244 # v7.1.4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| activate-environment: true | |
| enable-cache: true | |
| - name: Set TMPDIR (UNIX) | |
| if: ${{ !startsWith(matrix.os, 'windows') }} | |
| run: echo 'TMPDIR=/tmp' | tee -a "$GITHUB_ENV" | |
| - name: Set TMPDIR (Windows) | |
| if: startsWith(matrix.os, 'windows') | |
| run: | | |
| cat << EOF >> get_tmpdir.py | |
| import pathlib | |
| import tempfile | |
| path = pathlib.Path(tempfile.gettempdir()) | |
| print(path.as_posix()) | |
| EOF | |
| echo "TMPDIR=$(python get_tmpdir.py)" | tee -a "$GITHUB_ENV" | |
| - name: Generate cache key | |
| id: cache-key | |
| run: | | |
| set -e | |
| set -u | |
| arch='${{ matrix.arch }}' | |
| os='${{ matrix.os }}' | |
| if [[ "$os" == ubuntu-* && "$arch" == x86_64 ]]; then | |
| deps_cache_key='${{ needs.build-deps-linux-x86.outputs.cache-key }}' | |
| deps_cache_path='${{ needs.build-deps-linux-x86.outputs.tar }}' | |
| elif [[ "$os" == ubuntu-* && "$arch" == aarch64 ]]; then | |
| deps_cache_key='${{ needs.build-deps-linux-arm64.outputs.cache-key }}' | |
| deps_cache_path='${{ needs.build-deps-linux-arm64.outputs.tar }}' | |
| elif [[ "$os" == macos-* && "$arch" == x86_64 ]]; then | |
| deps_cache_key='${{ needs.build-deps-macos-x86.outputs.cache-key }}' | |
| deps_cache_path='${{ needs.build-deps-macos-x86.outputs.tar }}' | |
| elif [[ "$os" == macos-* && "$arch" == arm64 ]]; then | |
| deps_cache_key='${{ needs.build-deps-macos-arm64.outputs.cache-key }}' | |
| deps_cache_path='${{ needs.build-deps-macos-arm64.outputs.tar }}' | |
| elif [[ "$os" == windows-* && "$arch" == AMD64 ]]; then | |
| deps_cache_key='${{ needs.build-deps-windows-x86.outputs.cache-key }}' | |
| deps_cache_path='${{ needs.build-deps-windows-x86.outputs.tar }}' | |
| else | |
| 1>&2 echo 'Unknown OS "${{ matrix.os }}" and/or architecture "${{ matrix.arch }}"' | |
| exit 1 | |
| fi | |
| { | |
| echo "deps-key=${deps_cache_key}" | |
| echo "deps-path=${deps_cache_path}" | |
| } | tee -a "$GITHUB_OUTPUT" | |
| - name: Restore cached dependencies | |
| uses: actions/cache/restore@v4 | |
| with: | |
| key: ${{ steps.cache-key.outputs.deps-key }} | |
| path: ${{ steps.cache-key.outputs.deps-path }} | |
| fail-on-cache-miss: true | |
| - name: Unpack dependencies (Linux) | |
| if: startsWith(matrix.os, 'ubuntu') | |
| run: zstd -dv '${{ steps.cache-key.outputs.deps-path }}' | |
| - name: Unpack dependencies (macOS) | |
| if: startsWith(matrix.os, 'macos') | |
| run: gtar -C "$TMPDIR" -xf '${{ steps.cache-key.outputs.deps-path }}' | |
| - name: Unpack dependencies (Windows) | |
| if: startsWith(matrix.os, 'windows') | |
| run: tar -C "$TMPDIR" -xf "$(cygpath -u '${{ steps.cache-key.outputs.deps-path }}')" | |
| - name: Build wheels | |
| uses: pypa/cibuildwheel@63fd63b352a9a8bdcc24791c9dbee952ee9a8abc # v3.3.0 | |
| with: | |
| only: ${{ matrix.wheel-config }} | |
| env: | |
| CIBW_BUILD_VERBOSITY: 1 | |
| CIBW_ENVIRONMENT_LINUX: > | |
| CC=clang | |
| CXX=clang++ | |
| PIP_VERBOSE=1 | |
| CMAKE_AR=llvm-ar | |
| CMAKE_LINKER_TYPE=LLD | |
| CMAKE_PREFIX_PATH='/${{ env.TMPDIR }}/deps/cmake' | |
| CMAKE_RANLIB=llvm-ranlib | |
| HICTKPY_CXX_STANDARD=23 | |
| HICTKPY_PROJECT_TOP_LEVEL_INCLUDES='' | |
| UV_LINK_MODE=copy | |
| CIBW_ENVIRONMENT_MACOS: > | |
| CC=clang | |
| CXX=clang++ | |
| PIP_VERBOSE=1 | |
| CMAKE_PREFIX_PATH='${{ env.TMPDIR }}/deps/cmake' | |
| HICTKPY_CXX_STANDARD=23 | |
| HICTKPY_OSX_DEPLOYMENT_TARGET=14.0 | |
| HICTKPY_PROJECT_TOP_LEVEL_INCLUDES='' | |
| MACOSX_DEPLOYMENT_TARGET=14.0 | |
| UV_LINK_MODE=copy | |
| CIBW_ENVIRONMENT_WINDOWS: > | |
| PIP_VERBOSE=1 | |
| CMAKE_PREFIX_PATH='${{ env.TMPDIR }}\\deps\\cmake' | |
| HICTKPY_BUILD_PORTABLE_WHEELS_WIN=ON | |
| HICTKPY_CXX_STANDARD=23 | |
| HICTKPY_PROJECT_TOP_LEVEL_INCLUDES='' | |
| UV_LINK_MODE=copy | |
| CIBW_ENVIRONMENT_PASS_LINUX: > | |
| CC | |
| CXX | |
| PIP_VERBOSE | |
| CMAKE_AR | |
| CMAKE_LINKER_TYPE | |
| CMAKE_PREFIX_PATH | |
| CMAKE_RANLIB | |
| HICTKPY_CXX_STANDARD | |
| HICTKPY_PROJECT_TOP_LEVEL_INCLUDES | |
| UV_LINK_MODE | |
| - name: Verify clean directory | |
| run: git diff --exit-code | |
| - name: Upload wheels | |
| uses: actions/upload-artifact@v5 | |
| with: | |
| name: "wheels-${{ matrix.wheel-config }}" | |
| path: wheelhouse/*.whl | |
| if-no-files-found: error | |
| retention-days: 1 | |
| package-artifacts: | |
| name: Package artifacts | |
| runs-on: ubuntu-latest | |
| needs: | |
| - build-sdist | |
| - build-wheels | |
| steps: | |
| - name: Download artifacts | |
| uses: actions/download-artifact@v6 | |
| with: | |
| path: artifacts | |
| - name: Archive artifacts | |
| run: | | |
| mkdir dist/ | |
| find artifacts -type f -name "hictkpy*.whl" -exec cp '{}' dist/ \; | |
| find artifacts -type f -name "hictkpy*.tar.gz" -exec cp '{}' dist/ \; | |
| tar -cf dist.tar dist/ | |
| - name: Upload artifact | |
| uses: actions/upload-artifact@v5 | |
| with: | |
| name: dist | |
| path: dist.tar | |
| if-no-files-found: error | |
| retention-days: 7 | |
| pypi-publish: | |
| name: Upload release to PyPI | |
| if: github.event_name == 'release' && github.event.action == 'published' | |
| needs: [package-artifacts] | |
| environment: | |
| name: PyPI | |
| url: https://pypi.org/p/hictkpy | |
| permissions: | |
| id-token: write | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Download artifacts | |
| uses: actions/download-artifact@v6 | |
| with: | |
| name: dist | |
| merge-multiple: true | |
| - name: Extract dist.tar | |
| run: | | |
| tar -xf dist.tar | |
| rm dist.tar | |
| - name: Upload wheels to PyPI | |
| uses: pypa/gh-action-pypi-publish@ed0c53931b1dc9bd32cbe73a98c7f6766f8a527e # v1.13.0 | |
| with: | |
| attestations: true | |
| print-hash: true | |
| verbose: true | |
| build-wheels-status-check: | |
| name: Status Check (Build wheels) | |
| if: ${{ always() }} | |
| runs-on: ubuntu-latest | |
| needs: | |
| - build-sdist | |
| - build-wheels | |
| - package-artifacts | |
| - pypi-publish | |
| steps: | |
| - name: Collect job results | |
| if: | | |
| needs.build-sdist.result != 'success' || | |
| needs.build-wheels.result != 'success' || | |
| needs.package-artifacts.result != 'success' || | |
| ( | |
| needs.pypi-publish.result != 'success' && | |
| needs.pypi-publish.result != 'skipped' | |
| ) | |
| run: exit 1 |