Apply suggestions from code review

Author: aeisenberg

src/config-utils.test.ts

@@ -2504,9 +2504,6 @@ test("no generateRegistries when CLI is too old", async (t) => {
       undefined,
       "'registries' input is not supported on CodeQL versions less than 2.10.4."
     );
-
-    // t.is(registriesAuthTokens, undefined);
-    // t.is(qlconfigFile, undefined);
   });
 });
 test("no generateRegistries when registries is undefined", async (t) => {

src/init.ts

@@ -111,7 +111,8 @@ export async function runInit(
 
   try {
     if (await codeQlVersionAbove(codeql, CODEQL_VERSION_NEW_TRACING)) {
-      // Only create the qlconfig file if we haven't already created it.
+      // When parsing the codeql config in the CLI, we have not yet created the qlconfig file. 
+      // So, create it now.
       // If we are parsing the config file in the Action, then we already created the qlconfig
       // file in `configUtils.generateRegistries`.
       let registriesAuthTokens: string | undefined;