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237 lines (237 loc) · 4.21 KB
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reading data from data//tasic//runtime_exp//tpm_transposed_1000.mtx
[1] "make sce object"
[1] "compute qUMIs"
[1] "done. qUMI time:"
user system elapsed
19.405 9.417 3.755
[1] "preparing batches"
[1] "compute census counts"
[1] "number of batches:"
[1] 1
[1] "working on batch"
[1] 1
[1] "done. census time:"
user system elapsed
1081.641 8.063 1089.468
reading data from data//tasic//runtime_exp//tpm_transposed_5000.mtx
[1] "make sce object"
[1] "compute qUMIs"
[1] "done. qUMI time:"
user system elapsed
109.461 23.640 10.540
[1] "preparing batches"
[1] "compute census counts"
[1] "number of batches:"
[1] 5
[1] "working on batch"
[1] 1
[1] "working on batch"
[1] 2
[1] "working on batch"
[1] 3
[1] "working on batch"
[1] 4
[1] "working on batch"
[1] 5
[1] "done. census time:"
user system elapsed
4859.475 36.163 4894.571
reading data from data//tasic//runtime_exp//tpm_transposed_10000.mtx
[1] "make sce object"
[1] "compute qUMIs"
[1] "done. qUMI time:"
user system elapsed
213.608 44.703 20.657
[1] "preparing batches"
[1] "compute census counts"
[1] "number of batches:"
[1] 10
[1] "working on batch"
[1] 1
[1] "working on batch"
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[1] "working on batch"
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[1] "working on batch"
[1] 10
[1] "done. census time:"
user system elapsed
11421.273 202.474 11621.817
reading data from data//tasic//runtime_exp//tpm_transposed_20000.mtx
[1] "make sce object"
[1] "compute qUMIs"
[1] "done. qUMI time:"
user system elapsed
370.852 77.258 50.312
[1] "preparing batches"
[1] "compute census counts"
[1] "number of batches:"
[1] 20
[1] "working on batch"
[1] 1
[1] "working on batch"
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[1] "working on batch"
[1] 20
[1] "done. census time:"
user system elapsed
25651.68 1834.75 27479.68
reading data from data//tasic//runtime_exp//tpm_transposed_50000.mtx
[1] "make sce object"
[1] "compute qUMIs"
[1] "done. qUMI time:"
user system elapsed
1036.484 150.208 158.616
[1] "preparing batches"
[1] "compute census counts"
[1] "number of batches:"
[1] 50
[1] "working on batch"
[1] 1
[1] "working on batch"
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[1] "done. census time:"
user system elapsed
49613.971 3468.386 53067.409