nf-cellpose/.nf-core.yml at main · JaneliaSciComp/nf-cellpose · GitHub

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repository_type: pipeline

nf_core_version: 4.0.2

lint:
  files_unchanged:
    - CODE_OF_CONDUCT.md
    - assets/nf-core-nf-cellpose_logo_light.png
    - docs/images/nf-core-nf-cellpose_logo_light.png
    - docs/images/nf-core-nf-cellpose_logo_dark.png
    - .github/ISSUE_TEMPLATE/bug_report.yml
    - .github/CONTRIBUTING.md
    - .github/PULL_REQUEST_TEMPLATE.md
    - assets/email_template.txt
    - docs/README.md
  nextflow_config:
    - manifest.name
    - manifest.homePage
    - validation.help.beforeText
    - validation.help.afterText
    - validation.summary.beforeText
    - validation.summary.afterText
    - config_defaults:
        # value contains single quotes that Nextflow escapes and the linter cannot round-trip
        - params.zarr_compression_opts
        # resolves to a machine-specific absolute path via ${projectDir}
        - params.dask_config
  # this pipeline does not produce a MultiQC report
  multiqc_config: false
  # only subworkflows (no modules) are installed from nf-core/modules, which trips
  # the linter's requirement that every repo entry have a "modules" key
  modules_json: false
  files_exist:
    - CODE_OF_CONDUCT.md
    - assets/nf-core-nf-cellpose_logo_light.png
    - docs/images/nf-core-nf-cellpose_logo_light.png
    - docs/images/nf-core-nf-cellpose_logo_dark.png
    - .github/ISSUE_TEMPLATE/config.yml
    - .github/workflows/awstest.yml
    - .github/workflows/awsfulltest.yml

template:
  org: JaneliaSciComp
  name: nf_cellpose
  description: Cellpose segmentation pipeline
  author: Cristian Goina
  version: 1.0.0dev
  force: true
  outdir: .
  is_nfcore: false