pathogenic_variants.tsv

FILTER	QUAL	CHROM	POS	ID	AF	REF	ALT	dbNSFP_clinvar_id	dbNSFP_rs_dbSNP151	COMMON	GEN[*].GT	GEN[*].AD	GEN[*].DP	GEN[*].GQ	GEN[*].PL	ANN[0].ANNOTATION	ANN[0].IMPACT	ANN[0].GENE	dbNSFP_genename	ANN[0].FEATUREID	ANN[0].BIOTYPE	ANN[0].RANK	ANN[0].HGVS_C	ANN[0].HGVS_P	CLNSIG	dbNSFP_clinvar_clnsig	CLNREVSTAT	CLNDN	AF_EXAC	CLNSIGCONF	dbNSFP_1000Gp3_AF	dbNSFP_1000Gp3_SAS_AF	dbNSFP_ExAC_AF	dbNSFP_gnomAD_exomes_AF	dbNSFP_gnomAD_exomes_SAS_AF	dbNSFP_gnomAD_exomes_SAS_nhomalt	dbNSFP_gnomAD_genomes_AF	dbNSFP_gnomAD_genomes_nhomalt	dbNSFP_gnomAD_genomes_SAS_AF	dbNSFP_gnomAD_genomes_SAS_nhomalt	popmax	non_cancer_AF	non_neuro_AF	controls_AF	non_topmed_AF	AF_sas	AF_amr	AF_nfe	AF_eas	AF_afr	AF_nfe_onf	AF_eas_oea	AF_nfe_nwe	AF_nfe_seu	AF_nfe_swe	AF_eas_jpn	AF_eas_kor	AF_fin	AF_asj	AF_nfe_est	AF_oth	non_neuro_nhomalt_popmax	controls_nhomalt_popmax	non_topmed_nhomalt_popmax	nhomalt_popmax	non_cancer_nhomalt_popmax	dbNSFP_phastCons100way_vertebrate	dbNSFP_Polyphen2_HDIV_pred	dbNSFP_MutationTaster_pred	dbNSFP_SIFT_pred	dbNSFP_PROVEAN_pred	dbNSFP_CADD_phred_hg19	dbNSFP_FATHMM_pred	dbNSFP_VEP_canonical	dbNSFP_phyloP100way_vertebrate	dbNSFP_phyloP30way_mammalian	dbNSFP_GERP___RS	dbNSFP_Eigen_raw_coding
PASS	288.77	chr10	89623716	rs12573787;810888	0.5	G	A			1.0	0/1		16.0	83	317,0,83	missense_variant	MODERATE	PTEN		NM_001304717.5	protein_coding	1	c.10G>A	p.Gly4Arg	Conflicting_interpretations_of_pathogenicity		criteria_provided,_conflicting_interpretations	PTEN_hamartoma_tumor_syndrome|not_specified|Myeloproliferative_neoplasm,_unclassifiable|not_provided		Likely_pathogenic(1)|Benign(3)																																												False