.pre-commit-config.yaml

# MANAGED by EpiAwarePackageTools.scaffold — do not edit by hand.
repos:
#####
# Basic file cleanliness
-   repo: https://github.com/pre-commit/pre-commit-hooks
    rev: v5.0.0
    hooks:
    -   id: check-added-large-files
    # `templates/` (in a kit that ships scaffold templates) holds files with
    # `{{PLACEHOLDER}}` tokens that are not valid YAML/TOML until substituted,
    # so exclude that tree from the structural parsers. Absent in a normal
    # package, where these excludes are a no-op.
    -   id: check-yaml
        exclude: '^templates/'
    -   id: check-toml
        exclude: '^templates/'
    # `--assume-in-merge` so the check runs on every commit, not only while a
    # merge is in progress (the default only fires when `.git/MERGE_HEAD`
    # exists). Without it the hook is a no-op outside a merge, so a stray
    # conflict marker committed after a resolve — or with `--no-verify` — sails
    # through; that is how a marker reached CI on #250 (#251).
    -   id: check-merge-conflict
        args: [--assume-in-merge]
    -   id: check-json
    -   id: debug-statements
    -   id: end-of-file-fixer
    -   id: mixed-line-ending
    -   id: trailing-whitespace
#####
# Conflict markers the stock hook misses
# `check-merge-conflict` only looks for `<<<<<<<`, `=======` and `>>>>>>>`. A
# `diff3`/`zdiff3` conflict style also emits a `|||||||` base marker, which it
# does NOT catch — that is the exact marker that reached CI on #250. Forbid it
# explicitly. Seven pipes at the start of a line (`||||||| <ref>`) is the
# marker's shape and does not occur in real code or markdown tables (#251).
- repo: local
  hooks:
  - id: forbid-diff3-base-marker
    name: forbid diff3 conflict base marker
    entry: '^\|\|\|\|\|\|\|'
    language: pygrep
    types: [text]
#####
# Julia
# Due to lack of first-class Julia support, this needs a local Julia install
#  with JuliaFormatter.jl available. Keep `rev` in step with the pinned
#  JuliaFormatter in the formatter test environment and `.JuliaFormatter.toml`.
- repo: https://github.com/domluna/JuliaFormatter.jl
  rev: v2.10.1
  hooks:
  - id: julia-formatter
    # A package that ships scaffold templates (e.g. EpiAwarePackageTools) keeps
    # them under `templates/`; some carry `{{PLACEHOLDER}}` tokens that are not
    # parseable Julia until substituted, so exclude that tree from formatting.
    # The directory is absent in a normal package, where this is a no-op.
    exclude: '^templates/'
#####
# Secrets
-   repo: https://github.com/Yelp/detect-secrets
    rev: v1.5.0
    hooks:
    -   id: detect-secrets
        args: ['--baseline', '.secrets.baseline']
        exclude: '.*/Manifest\.toml$'