Delete assets/02c_partial_collapse_month9_labeled_en.png #203
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| name: tests | |
| on: | |
| push: | |
| pull_request: | |
| jobs: | |
| pytest: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.10", "3.11", "3.12"] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| cache: pip | |
| - name: Install package and test dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install -e . | |
| pip install pytest | |
| - name: Run test suite | |
| run: pytest -q | |
| imports: | |
| # Build and install the real distribution, then leave the checkout before | |
| # importing. An editable install can hide packages omitted from the wheel. | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.12" | |
| cache: pip | |
| - run: | | |
| python -m pip install --upgrade pip | |
| pip install build | |
| python -m build --wheel | |
| pip install dist/*.whl | |
| - name: Import every packaged entry point | |
| run: | | |
| cd "$(mktemp -d)" | |
| python -c "import lung_nematic" | |
| python -c "import lung_nematic.synthetic" | |
| python -c "import simulations.alveolar" | |
| python -c "import simulations.alveolar3d" | |
| python -c "import simulations.fibrofocus" | |
| python -c "import simulations.coupled_analysis" | |
| lint: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.12" | |
| cache: pip | |
| - run: pip install ruff==0.16.0 | |
| - name: Ruff | |
| run: ruff check lung_nematic simulations tests | |
| notebooks: | |
| # A malformed notebook (collapsed source, invalid schema) is invisible until | |
| # someone opens it in Colab. nbformat.validate catches it in CI. | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.12" | |
| cache: pip | |
| - run: pip install nbformat | |
| - name: Validate notebooks | |
| run: | | |
| python - <<'PY' | |
| import glob, sys | |
| import nbformat | |
| failed = False | |
| for path in glob.glob("*.ipynb"): | |
| try: | |
| nbformat.validate(nbformat.read(path, as_version=4)) | |
| print(f"ok {path}") | |
| except Exception as error: | |
| print(f"FAIL {path}: {error}") | |
| failed = True | |
| sys.exit(1 if failed else 0) | |
| PY |