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Remove the pubchem retry code
Per review comments, removing the retry code.
1 parent 5bafc2e commit b8ccb5f

1 file changed

Lines changed: 2 additions & 68 deletions

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src/openfermion/chem/pubchem_test.py

Lines changed: 2 additions & 68 deletions
Original file line numberDiff line numberDiff line change
@@ -80,20 +80,6 @@ def mock_get_compounds(name, searchtype, record_type='2d'):
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8181
@using_pubchempy
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class OpenFermionPubChemTest(unittest.TestCase):
83-
def _get_geometry_with_retries(self, name):
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import urllib.error
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import pubchempy
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max_retries = 3
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delay = 2
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for attempt in range(max_retries):
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try:
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return geometry_from_pubchem(name)
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except (pubchempy.PubChemHTTPError, urllib.error.URLError):
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if attempt == max_retries - 1:
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raise
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time.sleep(delay)
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@patch('pubchempy.get_compounds', mock_get_compounds)
9985
def test_water(self):
@@ -166,59 +152,7 @@ def test_water_2d(self):
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with pytest.raises(ValueError, match='Incorrect value for the argument structure'):
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_ = geometry_from_pubchem('water', structure='foo')
168154

169-
@pytest.mark.integration
155+
@pytest.mark.flaky(retries=3, delay=2)
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def test_geometry_from_pubchem_live_api(self):
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water_geometry = self._get_geometry_with_retries('water') # pragma: no cover
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water_geometry = geometry_from_pubchem('water') # pragma: no cover
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self.assertEqual(len(water_geometry), 3) # pragma: no cover
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@patch('time.sleep', return_value=None)
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@patch('pubchempy.get_compounds')
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def test_geometry_from_pubchem_retry_success(self, mock_get_compounds, mock_sleep):
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import pubchempy
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mock_get_compounds.side_effect = [
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pubchempy.PubChemHTTPError(503, 'Server Busy', 'Testing'),
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pubchempy.PubChemHTTPError(503, 'Server Busy', 'Testing'),
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[
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MockCompound(
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[
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{'aid': 1, 'number': 8, 'element': 'O', 'y': 0, 'z': 0, 'x': 0},
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{
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'aid': 2,
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'number': 1,
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'element': 'H',
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'y': 0.8929,
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'z': 0.2544,
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'x': 0.2774,
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},
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{
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'aid': 3,
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'number': 1,
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'element': 'H',
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'y': -0.2383,
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'z': -0.7169,
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'x': 0.6068,
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},
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]
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)
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],
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]
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water_geometry = self._get_geometry_with_retries('water')
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self.assertEqual(len(water_geometry), 3)
210-
self.assertEqual(mock_get_compounds.call_count, 3)
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self.assertEqual(mock_sleep.call_count, 2)
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@patch('time.sleep', return_value=None)
214-
@patch('pubchempy.get_compounds')
215-
def test_geometry_from_pubchem_retry_failure(self, mock_get_compounds, mock_sleep):
216-
import pubchempy
217-
218-
mock_get_compounds.side_effect = pubchempy.PubChemHTTPError(503, 'Server Busy', 'Testing')
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220-
with self.assertRaises(pubchempy.PubChemHTTPError):
221-
self._get_geometry_with_retries('water')
222-
223-
self.assertEqual(mock_get_compounds.call_count, 3)
224-
self.assertEqual(mock_sleep.call_count, 2)

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