Update requirements files using pip-compile

These are the latest files following the addition of more
`--unsafe-package` flags in `run-pip-compile.sh`.

Author: mhucka

dev_tools/requirements/deps/runtime.txt

@@ -10,6 +10,6 @@ scipy~=1.15
 
 sympy
 
-# Transitive dependency. Versions 1.3.3+ require Python 11. Constraining it
+# Transitive dependency. Versions 1.3.3+ require Python 311. Constraining it
 # lets us produce a single set of requirements files for Python 3.10 - 3.12.
 contourpy<1.3.3

dev_tools/requirements/envs/format.env.txt

@@ -2,21 +2,21 @@
 # This file is autogenerated by pip-compile with Python 3.10
 # by the following command:
 #
-#    pip-compile --constraint=envs/dev.env.txt --output-file=envs/format.env.txt --unsafe-package=backports.asyncio.runner deps/format.txt deps/runtime.txt
+#    pip-compile --constraint=envs/dev.env.txt --output-file=envs/format.env.txt --unsafe-package=backports.asyncio.runner --unsafe-package=pip --unsafe-package=setuptools deps/format.txt deps/runtime.txt
 #
 attrs==25.4.0
     # via
     #   -c envs/dev.env.txt
     #   cirq-core
-black==26.1.0
+black==26.3.1
     # via
     #   -c envs/dev.env.txt
     #   -r deps/format.txt
-certifi==2026.1.4
+certifi==2026.2.25
     # via
     #   -c envs/dev.env.txt
     #   requests
-charset-normalizer==3.4.4
+charset-normalizer==3.4.5
     # via
     #   -c envs/dev.env.txt
     #   requests
@@ -45,19 +45,19 @@ duet==0.2.9
     # via
     #   -c envs/dev.env.txt
     #   cirq-core
-fonttools==4.61.1
+fonttools==4.62.0
     # via
     #   -c envs/dev.env.txt
     #   matplotlib
-h5py==3.15.1
+h5py==3.16.0
     # via
     #   -c envs/dev.env.txt
     #   -r deps/runtime.txt
 idna==3.11
     # via
     #   -c envs/dev.env.txt
     #   requests
-kiwisolver==1.4.9
+kiwisolver==1.5.0
     # via
     #   -c envs/dev.env.txt
     #   matplotlib
@@ -106,7 +106,7 @@ pillow==12.1.1
     # via
     #   -c envs/dev.env.txt
     #   matplotlib
-platformdirs==4.9.2
+platformdirs==4.9.4
     # via
     #   -c envs/dev.env.txt
     #   black
@@ -127,7 +127,7 @@ pytokens==0.4.1
     # via
     #   -c envs/dev.env.txt
     #   black
-pytz==2025.2
+pytz==2026.1.post1
     # via
     #   -c envs/dev.env.txt
     #   pandas

dev_tools/requirements/envs/mypy.env.txt

@@ -2,17 +2,17 @@
 # This file is autogenerated by pip-compile with Python 3.10
 # by the following command:
 #
-#    pip-compile --constraint=envs/dev.env.txt --output-file=envs/mypy.env.txt --unsafe-package=backports.asyncio.runner deps/mypy.txt deps/runtime.txt
+#    pip-compile --constraint=envs/dev.env.txt --output-file=envs/mypy.env.txt --unsafe-package=backports.asyncio.runner --unsafe-package=pip --unsafe-package=setuptools deps/mypy.txt deps/runtime.txt
 #
 attrs==25.4.0
     # via
     #   -c envs/dev.env.txt
     #   cirq-core
-certifi==2026.1.4
+certifi==2026.2.25
     # via
     #   -c envs/dev.env.txt
     #   requests
-charset-normalizer==3.4.4
+charset-normalizer==3.4.5
     # via
     #   -c envs/dev.env.txt
     #   requests
@@ -37,19 +37,19 @@ duet==0.2.9
     # via
     #   -c envs/dev.env.txt
     #   cirq-core
-fonttools==4.61.1
+fonttools==4.62.0
     # via
     #   -c envs/dev.env.txt
     #   matplotlib
-h5py==3.15.1
+h5py==3.16.0
     # via
     #   -c envs/dev.env.txt
     #   -r deps/runtime.txt
 idna==3.11
     # via
     #   -c envs/dev.env.txt
     #   requests
-kiwisolver==1.4.9
+kiwisolver==1.5.0
     # via
     #   -c envs/dev.env.txt
     #   matplotlib
@@ -124,7 +124,7 @@ python-dateutil==2.9.0.post0
     #   -c envs/dev.env.txt
     #   matplotlib
     #   pandas
-pytz==2025.2
+pytz==2026.1.post1
     # via
     #   -c envs/dev.env.txt
     #   pandas
@@ -158,11 +158,11 @@ tqdm==4.67.3
     # via
     #   -c envs/dev.env.txt
     #   cirq-core
-types-networkx==3.6.1.20260210
+types-networkx==3.6.1.20260303
     # via
     #   -c envs/dev.env.txt
     #   -r deps/mypy.txt
-types-pytz==2025.2.0.20251108
+types-pytz==2026.1.1.20260304
     # via
     #   -c envs/dev.env.txt
     #   pandas-stubs

dev_tools/requirements/envs/pip-tools.env.txt

@@ -2,7 +2,7 @@
 # This file is autogenerated by pip-compile with Python 3.10
 # by the following command:
 #
-#    pip-compile --constraint=envs/dev.env.txt --output-file=envs/pip-tools.env.txt --unsafe-package=backports.asyncio.runner deps/pip-tools.txt
+#    pip-compile --constraint=envs/dev.env.txt --output-file=envs/pip-tools.env.txt --unsafe-package=backports.asyncio.runner --unsafe-package=pip --unsafe-package=setuptools deps/pip-tools.txt
 #
 build==1.4.0
     # via
@@ -17,10 +17,6 @@ packaging==26.0
     #   -c envs/dev.env.txt
     #   build
     #   wheel
-pip==26.0.1
-    # via
-    #   -c envs/dev.env.txt
-    #   pip-tools
 pip-tools==7.5.3
     # via
     #   -c envs/dev.env.txt
@@ -30,10 +26,6 @@ pyproject-hooks==1.2.0
     #   -c envs/dev.env.txt
     #   build
     #   pip-tools
-setuptools==82.0.0
-    # via
-    #   -c envs/dev.env.txt
-    #   pip-tools
 tomli==2.4.0
     # via
     #   -c envs/dev.env.txt
@@ -43,3 +35,7 @@ wheel==0.46.3
     # via
     #   -c envs/dev.env.txt
     #   pip-tools
+
+# The following packages are considered to be unsafe in a requirements file:
+# pip
+# setuptools

dev_tools/requirements/envs/pylint.env.txt

@@ -2,7 +2,7 @@
 # This file is autogenerated by pip-compile with Python 3.10
 # by the following command:
 #
-#    pip-compile --constraint=envs/dev.env.txt --output-file=envs/pylint.env.txt --unsafe-package=backports.asyncio.runner deps/pylint.txt deps/runtime.txt
+#    pip-compile --constraint=envs/dev.env.txt --output-file=envs/pylint.env.txt --unsafe-package=backports.asyncio.runner --unsafe-package=pip --unsafe-package=setuptools deps/pylint.txt deps/runtime.txt
 #
 ase==3.27.0
     # via
@@ -18,11 +18,11 @@ attrs==25.4.0
     #   cirq-core
     #   jsonschema
     #   referencing
-certifi==2026.1.4
+certifi==2026.2.25
     # via
     #   -c envs/dev.env.txt
     #   requests
-charset-normalizer==3.4.4
+charset-normalizer==3.4.5
     # via
     #   -c envs/dev.env.txt
     #   requests
@@ -67,11 +67,11 @@ fastjsonschema==2.21.2
     # via
     #   -c envs/dev.env.txt
     #   nbformat
-fonttools==4.61.1
+fonttools==4.62.0
     # via
     #   -c envs/dev.env.txt
     #   matplotlib
-h5py==3.15.1
+h5py==3.16.0
     # via
     #   -c envs/dev.env.txt
     #   -r deps/runtime.txt
@@ -109,7 +109,7 @@ jupyter-core==5.9.1
     # via
     #   -c envs/dev.env.txt
     #   nbformat
-kiwisolver==1.4.9
+kiwisolver==1.5.0
     # via
     #   -c envs/dev.env.txt
     #   matplotlib
@@ -173,7 +173,7 @@ pillow==12.1.1
     # via
     #   -c envs/dev.env.txt
     #   matplotlib
-platformdirs==4.9.2
+platformdirs==4.9.4
     # via
     #   -c envs/dev.env.txt
     #   jupyter-core
@@ -227,7 +227,7 @@ python-dateutil==2.9.0.post0
     #   -c envs/dev.env.txt
     #   matplotlib
     #   pandas
-pytz==2025.2
+pytz==2026.1.post1
     # via
     #   -c envs/dev.env.txt
     #   pandas
@@ -254,10 +254,6 @@ scipy==1.15.3
     #   jax
     #   jaxlib
     #   pyscf
-setuptools==82.0.0
-    # via
-    #   -c envs/dev.env.txt
-    #   pyscf
 six==1.17.0
     # via
     #   -c envs/dev.env.txt
@@ -309,3 +305,4 @@ urllib3==2.6.3
 
 # The following packages are considered to be unsafe in a requirements file:
 # backports-asyncio-runner
+# setuptools

dev_tools/requirements/envs/pytest-extra.env.txt

@@ -2,7 +2,7 @@
 # This file is autogenerated by pip-compile with Python 3.10
 # by the following command:
 #
-#    pip-compile --constraint=envs/dev.env.txt --output-file=envs/pytest-extra.env.txt --unsafe-package=backports.asyncio.runner deps/pytest.txt deps/resource_estimates_runtime.txt deps/runtime.txt
+#    pip-compile --constraint=envs/dev.env.txt --output-file=envs/pytest-extra.env.txt --unsafe-package=backports.asyncio.runner --unsafe-package=pip --unsafe-package=setuptools deps/pytest.txt deps/resource_estimates_runtime.txt deps/runtime.txt
 #
 ase==3.27.0
     # via
@@ -14,11 +14,11 @@ attrs==25.4.0
     #   cirq-core
     #   jsonschema
     #   referencing
-certifi==2026.1.4
+certifi==2026.2.25
     # via
     #   -c envs/dev.env.txt
     #   requests
-charset-normalizer==3.4.4
+charset-normalizer==3.4.5
     # via
     #   -c envs/dev.env.txt
     #   requests
@@ -59,11 +59,11 @@ fastjsonschema==2.21.2
     # via
     #   -c envs/dev.env.txt
     #   nbformat
-fonttools==4.61.1
+fonttools==4.62.0
     # via
     #   -c envs/dev.env.txt
     #   matplotlib
-h5py==3.15.1
+h5py==3.16.0
     # via
     #   -c envs/dev.env.txt
     #   -r deps/runtime.txt
@@ -97,7 +97,7 @@ jupyter-core==5.9.1
     # via
     #   -c envs/dev.env.txt
     #   nbformat
-kiwisolver==1.4.9
+kiwisolver==1.5.0
     # via
     #   -c envs/dev.env.txt
     #   matplotlib
@@ -157,7 +157,7 @@ pillow==12.1.1
     # via
     #   -c envs/dev.env.txt
     #   matplotlib
-platformdirs==4.9.2
+platformdirs==4.9.4
     # via
     #   -c envs/dev.env.txt
     #   jupyter-core
@@ -206,7 +206,7 @@ python-dateutil==2.9.0.post0
     #   -c envs/dev.env.txt
     #   matplotlib
     #   pandas
-pytz==2025.2
+pytz==2026.1.post1
     # via
     #   -c envs/dev.env.txt
     #   pandas
@@ -233,10 +233,6 @@ scipy==1.15.3
     #   jax
     #   jaxlib
     #   pyscf
-setuptools==82.0.0
-    # via
-    #   -c envs/dev.env.txt
-    #   pyscf
 six==1.17.0
     # via
     #   -c envs/dev.env.txt
@@ -282,3 +278,4 @@ urllib3==2.6.3
 
 # The following packages are considered to be unsafe in a requirements file:
 # backports-asyncio-runner
+# setuptools