Merge branch 'main' into matlab_to_python

Author: CaywoodR

AUTHORS

@@ -10,10 +10,14 @@ Miguel Dumett
 Joe Hellmers
 Arshia Ilaty
 Katayoon Kaviani
+Marc Loschen
 Oluchi Nzerem
 Giulia Pagallo
 Christopher Paolini
+Jiya Santosh Rathi
 Valentina Rosano
 Aneesh Murthy Srinivas
 Janani Priyadharshini Srinivasan
-Manuel Valera
+Manuel Valera
+Ben Wagner
+Deepanshu Zade

CITATION.cff

@@ -28,12 +28,16 @@ authors:
   given-names: Arshia
 - family-names: Kaviani
   given-names: Katayoon
+- family-names: Loschen
+  given-names: Marc
 - family-names: Nzerem
   given-names: Oluchi
 - family-names: Pagallo
   given-names: Giulia
 - family-names: Paolini
   given-names: Christopher
+- family-names: Rathi
+  given-names: Jiya Santosh
 - family-names: Rosano
   given-names: Valentina
 - family-names: Srinivas
@@ -42,9 +46,13 @@ authors:
   given-names: Janani Priyadharshini
 - family-names: Valera
   given-names: Manuel
-doi: https://zenodo.org/records/16898575
-version: "1.1.0"
-date-released: "2025-08-13"
+- family-names: Wagner
+  given-names: Ben
+- family-names: Zade
+  given-names: Deepanshu
+doi: https://zenodo.org/records/20128874
+version: "1.2.0"
+date-released: "2026-05-08"
 url: https://mole-docs.readthedocs.io/en/main/
 repository: https://github.com/csrc-sdsu/mole
 preferred-citation:

README.md

@@ -204,20 +204,23 @@ The archival copy of the MOLE User Manual is maintained on [Zenodo](https://zeno
                   Hellmers, Joe and
                   Ilaty, Arshia and
                   Kaviani, Katayoon and
+                  Loschen, Marc and
                   Nzerem, Oluchi and
                   Pagallo, Giulia and
                   Paolini, Christopher and
+                  Rathi, Jiya and
                   Rosano, Valentina and
                   Srinivas, Aneesh Murthy and
                   Srinivasan, Janani Priyadharshini and
-                  Valera, Manuel},
-   title        = {{MOLE User Manual}},
-   month        = aug,
-   year         = 2025,
-   publisher    = {Zenodo},
-   version      = {1.1.0},
-   doi          = {10.5281/zenodo.16898575},
-   url          = {https://doi.org/10.5281/zenodo.16898575},
+                  Valera, Manuel and
+                  Wagner, Ben and
+                  Zade, Deepanshu},
+  title        = {MOLE User Manual},
+  month        = may,
+  year         = 2026,
+  publisher    = {Zenodo},
+  doi          = {10.5281/zenodo.20128874},
+  url          = {https://doi.org/10.5281/zenodo.20128874},
 }
 ```
 

doc/sphinx/source/conf.py

@@ -36,7 +36,7 @@
 with open("../../../AUTHORS") as f:
     authorlist = f.readlines()
 author = ", ".join(authorlist)
-release = '1.1.0'
+release = '1.2.0'
 master_doc = 'index'
 root_doc = 'index'
 

RELEASING.md doc/sphinx/source/dev-notes/RELEASING.mdRELEASING.md renamed to doc/sphinx/source/dev-notes/RELEASING.md

@@ -9,13 +9,16 @@ We ideally want all release mechanics to be in one commit, which will then be ta
 
 Some minor bookkeeping updates are needed when releasing a new version of MOLE.
 
-The version number must be updated in:
+The version number must be updated in the following files:
 
-* `CITATION.cff` (update the `doi` field and `date-published` if needed)
-* `README.md` (if version-specific badges or information exist)
+* `mole/CITATION.cff`: update the `authors`, `doi`, and `date-released` fields if needed
+* `mole/README.md`: in the How to Cite section
+* `mole/doc/sphinx/source/conf.py`: the `release` field
 
-Additionally, the release notes should be generated and reviewed.
-Use `git log --first-parent v1.0..` to get a sense of the pull requests that have been merged since the last release and thus might warrant emphasizing in the release notes.
+
+Additionally, the change log should be generated and reviewed.
+
+Use `git log --first-parent v1.0..` to get a sense of the pull requests that have been merged since the last release and thus might warrant emphasizing in the change log.
 
 While doing this, gather a couple sentences for key features to highlight on [GitHub releases](https://github.com/csrc-sdsu/mole/releases).
 

doc/sphinx/source/dev-notes/index.md

@@ -0,0 +1,10 @@
+# Developer Notes
+
+This section provides some notes useful for developers and maintainers of MOLE.
+
+```{toctree}
+:maxdepth: 1
+:caption: Developer Releasing Notes
+
+RELEASING
+```

doc/sphinx/source/index.md

@@ -56,6 +56,13 @@ Code of Conduct <intros/code_of_conduct_wrapper>
 Publications <intros/publications_wrapper>
 ```
 
+```{toctree}
+:maxdepth: 1
+:caption: Developer Notes
+:name: developer-nav
+dev-notes/index
+```
+
 <!-- ```{toctree}
 :caption: Reference
 :hidden: