Merge pull request #330 from Sichao25/yus/code_wo_ref

Replace omega_h functions in Python API with PyOmega_h

Author: jacobmerson

.github/workflows/clang-tidy.yml

@@ -89,7 +89,7 @@ jobs:
       with:
         repo-name: 'omega_h-openmpi'
         repo-path: 'SCOREC/omega_h'
-        repo-ref: '1765836a00b9a64b8b3791f1442ac52f147e43b2'
+        repo-ref: '2b2e778472f48a85a5ff5e70083e3a415e58be72'
         cache: true
         options: '-DCMAKE_CXX_COMPILER=`which mpicxx`
                   -DCMAKE_C_COMPILER=`which mpicc`

.github/workflows/cmake-test.yml

@@ -112,12 +112,14 @@ jobs:
       with:
         repo-name: 'omega_h'
         repo-path: 'SCOREC/omega_h'
-        repo-ref: '1765836a00b9a64b8b3791f1442ac52f147e43b2'
+        repo-ref: '2b2e778472f48a85a5ff5e70083e3a415e58be72'
         cache: true
         cache-suffix: ${{ matrix.python_api == 'ON' && '-shared' || '' }}
         options: '-DCMAKE_CXX_COMPILER=`which mpicxx`
                   -DCMAKE_C_COMPILER=`which mpicc`
+                  -DCMAKE_BUILD_TYPE="RelWithDebInfo"
                   -DBUILD_SHARED_LIBS=${{ matrix.python_api }}
+                  -DOmega_h_USE_pybind11=${{ matrix.python_api }}
                   -DOmega_h_USE_MPI=ON
                   -DOmega_h_USE_Kokkos=ON
                   -DBUILD_TESTING=OFF
@@ -281,6 +283,7 @@ jobs:
       if: matrix.python_api == 'ON'
       run: |
         export PYTHONPATH=${{ runner.temp }}/build-pcms/install/lib/python3.12/site-packages:$PYTHONPATH
+        export PYTHONPATH=${{ runner.temp }}/build-omega_h/install/lib/python/dist-packages:$PYTHONPATH
         cd ${{ github.workspace }}/src/pcms/pythonapi
         python3 test_file_io.py
         python3 test_omega_h_field.py

src/pcms/pythonapi/CMakeLists.txt

@@ -10,7 +10,6 @@ pybind11_add_module(pcms
   bind_omega_h_field_layout.cpp
   bind_uniform_grid_field.cpp
   bind_uniform_grid_field_layout.cpp
-  bind_omega_h.cpp
         bind_transfer_field.cpp
         bind_mls_interpolation.cpp
         bind_mesh_utilities.cpp