wip

Author: nhsdevws

backend/src/mappings.py

@@ -55,4 +55,4 @@ class DiseaseCodes:
 ]
 
 
-# valid_disease_code_combinations = [x[0] for x in vaccine_type_mappings]
+valid_disease_code_combinations = [x[0] for x in vaccine_type_mappings]

recordprocessor/Makefile

@@ -8,12 +8,12 @@ test:
 	python -m unittest	
 
 coverage run:
-    coverage run -m unittest discover
+	coverage run -m unittest discover
 
 coverage report:
 	coverage report -m 
 
 coverage html:
-    coverage html  
+	coverage html  
 
 .PHONY: build package

recordprocessor/poetry.lock

@@ -7,7 +7,7 @@ readme      = "README.md"
 packages    = [{include = "src"}]
 
 [tool.poetry.dependencies]
-python                  = "~3.10"
+python                  = "~3.11"
 "fhir.resources"        = "~7.0.2"
 boto3                   = "~1.38.17"
 boto3-stubs-lite        = {extras = ["dynamodb"], version = "~1.26.90"}
@@ -25,6 +25,7 @@ structlog               = "^24.1.0"
 pandas                  = "^2.2.3"
 freezegun               = "^1.5.1"
 coverage                = "^7.8.0"
+redis                   = "^5.1.1"
 
 [build-system]
 requires      = ["poetry-core ~= 1.5.0"]

recordprocessor/pyproject.toml

@@ -3,7 +3,6 @@
 from enum import Enum
 from typing import Dict, List
 from constants import Urls
-from elasticache import get_disease_mapping_json_from_cache
 
 
 class Vaccine(Enum):
@@ -48,9 +47,6 @@ class DiseaseDisplayTerm(Enum):
     RSV: str = "Respiratory syncytial virus infection (disorder)"
 
 
-VACCINE_DISEASE_MAPPING2 = get_disease_mapping_json_from_cache()
-
-
 VACCINE_DISEASE_MAPPING: Dict[Vaccine, List[Disease]] = {
     Vaccine.COVID_19: [Disease.COVID_19],
     Vaccine.FLU: [Disease.FLU],

recordprocessor/src/mappings.py

@@ -0,0 +1,7 @@
+"""Mappings for converting vaccine type into target disease FHIR element"""
+
+
+from elasticache import get_disease_mapping_json_from_cache
+
+
+VACCINE_DISEASE_MAPPING2 = get_disease_mapping_json_from_cache()