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‎.github/workflows/sonarcloud.yml‎

Lines changed: 84 additions & 16 deletions
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@@ -6,17 +6,14 @@ on:
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- master
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pull_request:
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types: [labeled, opened, synchronize, reopened, unlabeled]
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env:
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SCRIPT_FOLDER: ./.github/scripts
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RUN_TEST: source ../.github/scripts/run_test.sh
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jobs:
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sonarcloud:
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name: SonarCloud
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runs-on: ubuntu-latest
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strategy:
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matrix:
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python-version: ['3.11']
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python-version: ['3.11', '3.10']
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steps:
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- uses: actions/checkout@v4
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- uses: actions/setup-python@v5
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with:
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python-version: ${{ matrix.python-version }}
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python-version: |
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3.10
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3.11
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cache: 'poetry'
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- name: Cache global Poetry virtualenvs
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uses: actions/cache@v4
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with:
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path: ~/.cache/pypoetry/virtualenvs
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key: ${{ runner.os }}-poetry-global-venv-py${{ matrix.python-version || 'all' }}-${{ hashFiles('**/poetry.lock') }}
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restore-keys: |
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${{ runner.os }}-poetry-global-venv-py${{ matrix.python-version || 'all' }}-
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- name: Set up AWS credentials
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env:
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AWS_ACCESS_KEY_ID: "FOOBARKEY"
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aws configure set aws_access_key_id $AWS_ACCESS_KEY_ID
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aws configure set aws_secret_access_key $AWS_SECRET_ACCESS_KEY
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- name: Chmod .github directory
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run: |
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chmod +x $SCRIPT_FOLDER/*.sh
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# - name: Run unittest with filenameprocessor-coverage
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# working-directory: filenameprocessor
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# id: filenameprocessor
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# continue-on-error: true
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# run: |
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# poetry env use 3.10
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# poetry install
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# poetry run coverage run -m unittest discover || echo "filenameprocessor tests failed" >> ../failed_tests.txt
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# poetry run coverage xml -o ../sonarcloud-coverage-filenameprocessor-coverage.xml
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- name: Cache global Poetry virtualenvs
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uses: actions/cache@v4
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with:
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path: ~/.cache/pypoetry/virtualenvs
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key: ${{ runner.os }}-poetry-global-venv-py${{ matrix.python-version }}-${{ hashFiles('**/poetry.lock') }}
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restore-keys: |
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${{ runner.os }}-poetry-global-venv-py${{ matrix.python-version }}-
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# - name: Run unittest with recordprocessor-coverage
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# working-directory: recordprocessor
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# id: recordprocessor
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# continue-on-error: true
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# run: |
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# poetry env use 3.10
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# poetry install
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# poetry run coverage run -m unittest discover || echo "recordprocessor tests failed" >> ../failed_tests.txt
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# poetry run coverage xml -o ../sonarcloud-coverage-recordprocessor-coverage.xml
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# # This step is redundant - all of these tests will be run in the backend step below
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# - name: Run unittest with recordforwarder-coverage
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# working-directory: backend
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# id: recordforwarder
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# continue-on-error: true
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# run: |
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# poetry env use 3.11
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# poetry install
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# poetry run coverage run -m unittest discover -s "./tests" -p "*batch*.py" || echo "recordforwarder tests failed" >> ../failed_tests.txt
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# poetry run coverage xml -o ../sonarcloud-coverage-recordforwarder-coverage.xml
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- name: Run unittest with coverage-ack-lambda
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if: matrix.python-version == '3.10'
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working-directory: ack_backend
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id: acklambda
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continue-on-error: true
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run: |
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poetry env use 3.10
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poetry install
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poetry run coverage run -m unittest discover || echo "ack-lambda tests failed" >> ../failed_tests.txt
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poetry run coverage xml -o ../sonarcloud-coverage-ack-lambda.xml
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- name: Run unittest with coverage-delta
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if: matrix.python-version == '3.11'
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PYTHONPATH: delta_backend/src:delta_backend/tests
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continue-on-error: true
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run: |
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$RUN_TEST 3.11 delta_backend delta.xml
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poetry env use 3.11
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poetry install
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poetry run coverage run -m unittest discover || echo "delta tests failed" >> ../failed_tests.txt
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poetry run coverage xml -o ../sonarcloud-coverage-delta.xml
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# - name: Run unittest with coverage-fhir-api
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# working-directory: backend
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# id: fhirapi
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# continue-on-error: true
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# run: |
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# poetry env use 3.11
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# poetry install
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# poetry run coverage run -m unittest discover || echo "fhir-api tests failed" >> ../failed_tests.txt
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# poetry run coverage xml -o ../sonarcloud-coverage.xml
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# - name: Run unittest with coverage-mesh-processor
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# working-directory: mesh_processor
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# id: meshprocessor
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# continue-on-error: true
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# run: |
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# poetry env use 3.10
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# poetry install
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# poetry run coverage run -m unittest discover || echo "mesh_processor tests failed" >> ../failed_tests.txt
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# poetry run coverage xml -o ../sonarcloud-mesh_processor-coverage.xml
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- name: Run Test Failure Summary
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id: check_failure
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else
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echo "All tests passed."
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fi
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- name: SonarCloud Scan
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uses: SonarSource/sonarqube-scan-action@master
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env:
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GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} # Needed to get PR information, if any
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SONAR_TOKEN: ${{ secrets.SONAR_TOKEN }}

‎.github/workflows/sonarcloud.yml.save‎

Lines changed: 0 additions & 156 deletions
This file was deleted.

‎.github/workflows/sonarcloud.yml.test‎

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name: SonarCloud
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on:
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push:
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branches:
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- master
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pull_request:
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types: [labeled, opened, synchronize, reopened, unlabeled]
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env:
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SCRIPT_FOLDER: ./.github/scripts
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RUN_TEST: source ../.github/scripts/run_test.sh
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jobs:
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sonarcloud:
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name: SonarCloud
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runs-on: ubuntu-latest
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strategy:
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matrix:
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python-version: ['3.11']
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steps:
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- uses: actions/checkout@v4
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with:
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fetch-depth: 0
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- name: Install poetry
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run: pip install poetry==1.8.4
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- uses: actions/setup-python@v5
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with:
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python-version: ${{ matrix.python-version }}
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cache: 'poetry'
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- name: Set up AWS credentials
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env:
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AWS_ACCESS_KEY_ID: "FOOBARKEY"
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AWS_SECRET_ACCESS_KEY: "FOOBARSECRET"
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run: |
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aws configure set aws_access_key_id $AWS_ACCESS_KEY_ID
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aws configure set aws_secret_access_key $AWS_SECRET_ACCESS_KEY
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- name: Chmod .github directory
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run: |
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chmod +x $SCRIPT_FOLDER/*.sh
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- name: Cache global Poetry virtualenvs
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uses: actions/cache@v4
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with:
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path: ~/.cache/pypoetry/virtualenvs
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key: ${{ runner.os }}-poetry-global-venv-py${{ matrix.python-version }}-${{ hashFiles('**/poetry.lock') }}
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restore-keys: |
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${{ runner.os }}-poetry-global-venv-py${{ matrix.python-version }}-
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- name: Run unittest with coverage-delta
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if: matrix.python-version == '3.11'
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working-directory: delta_backend
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id: delta
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env:
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PYTHONPATH: delta_backend/src:delta_backend/tests
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continue-on-error: true
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run: |
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$RUN_TEST 3.11 delta_backend delta.xml
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- name: Run Test Failure Summary
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id: check_failure
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run: |
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if [ -s failed_tests.txt ]; then
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echo "The following tests failed:"
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cat failed_tests.txt
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while IFS= read -r line; do
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echo "##[error]Test Failures: $line"
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done < failed_tests.txt
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exit 1
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else
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echo "All tests passed."
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fi

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